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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCCAAAGTATGCTTCGAAGTACCAAACTGCTGCAGAGAATGCCTTAAGCCATTGCTATCGTTCTTGCCTAGAACTTTTAATTGATCATGGGCTTAAAAGgtttttgtttcagatgttataacattgttttcttgaaacagttttttggtcatctcccatgcagccttaaagatctaaaacttgcttttttgttggcatatattgatcag

Basic information

species Glycine max
transcript GLYMA01G06730.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G06730.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv01s0011g00870.t01 (Vitis vinifera), 5'ss of exon 4
GCCCAAAGTATGCTTCGAAGTACCAAACTGCTGCAGAGAATGCCTTAAGCCATTGCTATCGTTCTTGCCTAGAACTTTTAATTGATCATGGGCTTAAAAGgtt--tttgtttcagatgttataa-cattgttttcttgaaacagttttttg------gtcatctcccatgcagccttaaagatctaaaacttgcttttttgttggcatatattgat-cag
| || ||||||||    || || || ||||||||||||||||| || || || |||||||| |||||||| |||||| | || ||  |||| ||| | |||||  ||  | |||||||||| |  ||||  ||||||| |    || ||        || | ||    |     ||||| || |   || ||  |||    ||| ||| | | ||| |||
GTCCCAAGTATGCAGTAAAATATCATACTGCTGCAGAGAATGCTTTGAGTCACTGCTATCGGTCTTGCCTTGAACTTCTTATAGAAAATGGCCTTCAGAGgttggttgctatcagatgttacattcatttctttcttgtatagattgttcatcacttgttacctttttttttttcttaatgaacgggaatttagttta--attgacatttttggatgcag