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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGGAACCTTCACTATGGATAAGAAGAAGCTACTTCAGCTAGTTGGGAAGGCTAACTCAAATTTGGCCGATGTGATTCTTAAAGTTGGTCTCTTTGAGAGgtattttatccctgttttagagaaatatgcatacggcaatgatgtaagaatatattgaaaatttaagattctagtatccctaaagatttcaaatatttgatttttagattcatttcatcctagagaatagtgagaaaatttggttaatgtttttttattgtggattaattag

Basic information

species Glycine max
transcript GLYMA01G06630.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G06630.2 (Glycine max), 5'ss of exon 5
lower sequence: AT1G69380.1 (Arabidopsis thaliana), 5'ss of exon 5
CTGGAACCTTCACTATGGATAAGAAGAAGCTACTTCAGCTAGTTGGGAAGGCTAACTCAAATTTGGCCGATGTGATTCTTAAAGTTGGTCTCTTTGAGAGgtattttatccctgttttagagaaatatgcatacggcaatgatgtaagaatatattgaaaatttaagattctagtatccctaaagatttcaaatatttgatttttagattcatttcatcctagagaatagtgagaaaatttggttaatgtttttttattgtggattaattag
| ||||| ||||| |||   | ||| |||||  | || || || |||||||| || || ||| | |||||||||||||| ||||||||| | ||||||||||||| ||    ||||  |      |||      |      ||| |    |||||  | |   | ||| ||   | | |     | ||||  |||                                                                             
CCGGAACATTCACAATGACCAGGAAAAAGCTCTTCCAACTTGTAGGGAAGGCGAATTCTAATATAGCCGATGTGATTCTCAAAGTTGGTTTGTTTGAGAGgtattctactaatgttaaatcactttatattgttgttttctatg-atctctatatatatatgctgagactcatatgttctctt-gttttctcatag----------------------------------------------------------------------------

upper sequence: GLYMA01G06630.2 (Glycine max), 5'ss of exon 5
lower sequence: Vv01s0010g00520.t01 (Vitis vinifera), 5'ss of exon 5
CTGGAACCTTCACTATGGATAAGAAGAAGCTACTTCAGCTAGTTGGGAAGGCTAACTCAAATTTGGCCGATGTGATTCTTAAAGTTGGTCTCTTTGAGAGgtattttatccctgttttagagaaatatgcatacggcaatgatgtaagaatatattgaaaatttaagattctagtatccctaaagatttcaaatatttgatttttagattcatttcatcctagagaatagtgagaaaatttggttaatgtttttttattgtggattaattag
||||||| ||||| ||||||| || ||||||  | || || ||||| || || || |||||  | |||||||| ||||| |||||||| ||||||||||||||      |   | |||     | |    ||    |    || |  |  ||| |      | |  |    |   |     | | || ||   | |||  || |||                                                                  
CTGGAACTTTCACAATGGATAGGAGGAAGCTCTTCCAACTTGTTGGAAAAGCCAATTCAAACCTAGCCGATGTCATTCTCAAAGTTGGACTCTTTGAGAGgtaaaaccactaggatttctc--atttcatattgcacttcaatatggggctatgtc-----tctctgcaggtgacaagtgcacaaatctcttttttttttttcttat-----------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18848595|gb|BM567752.1|BM567752
EST:     GCTAACTCAAATTTGGCCGATGTGATTCTTAAAGTTGGTCTCTTTGAGAG                         ATCAGAAATTGCTTGGAGGGATGCAAAGTATGCTCAAATATATGAGTATCT
genomic: GCTAACTCAAATTTGGCCGATGTGATTCTTAAAGTTGGTCTCTTTGAGAGgtattttatc ... gattaattagATCAGAAATTGCTTGGAGGGATGCAAAGTATGCTCAAATATATGAGTATCT
EST: gi|10234785|gb|BE803673.1|BE803673
EST:     GCTAACTCAAATGTGGCCGATGTGATTCTTAAAGTTGGTCTCTTTGAAAG                         ATCAGAAATCGCTTGGAGGGATGCAAAGTATGCTCAAATATATGAGTATCT
genomic: GCTAACTCAAATTTGGCCGATGTGATTCTTAAAGTTGGTCTCTTTGAGAGgtattttatc ... gattaattagATCAGAAATTGCTTGGAGGGATGCAAAGTATGCTCAAATATATGAGTATCT
EST: gi|254324256|gb|GR840573.1|GR840573
EST:     GCTAACTCAAATTTGGCCGATGTGATTCTTAAAGTTGGTCTCTTTGAGAG                         ATCAGAAATTGCTTGGAGGGATGCAAAGTATGCTCAAATATATGAGTATCT
genomic: GCTAACTCAAATTTGGCCGATGTGATTCTTAAAGTTGGTCTCTTTGAGAGgtattttatc ... gattaattagATCAGAAATTGCTTGGAGGGATGCAAAGTATGCTCAAATATATGAGTATCT
EST: gi|192321869|gb|FK013233.1|FK013233
EST:     GCTAACTCAAATTTGGCCGATGTGATTCTTAAAGTTGGTCTCTTTGAGAG                         ATCAGAAATTGCTTGGAGGGATGCAAAGTATGCTCAAATATATGAGTATCT
genomic: GCTAACTCAAATTTGGCCGATGTGATTCTTAAAGTTGGTCTCTTTGAGAGgtattttatc ... gattaattagATCAGAAATTGCTTGGAGGGATGCAAAGTATGCTCAAATATATGAGTATCT
EST: gi|22930913|gb|BU548052.1|BU548052
EST:     GCTAACTCAAATTTGGCCGATGTGATTCTTAAAGTTGGTCTCTTTGAGAG                         ATCAGAAATTGCTAGGAGGGATGCAAAGTATGCTCAAATATATGAGTATCT
genomic: GCTAACTCAAATTTGGCCGATGTGATTCTTAAAGTTGGTCTCTTTGAGAGgtattttatc ... gattaattagATCAGAAATTGCTTGGAGGGATGCAAAGTATGCTCAAATATATGAGTATCT
EST: gi|10234579|gb|BE803467.1|BE803467
EST:     GCTAACTCAAATTTGGCCGATGTGATTCTTAAAGTTGGTCTCTTTGAGAG                         ATCAGAAATTGCTTGGAGGGATGCAAAGTATGCTCAAATATATGAGTATCT
genomic: GCTAACTCAAATTTGGCCGATGTGATTCTTAAAGTTGGTCTCTTTGAGAGgtattttatc ... gattaattagATCAGAAATTGCTTGGAGGGATGCAAAGTATGCTCAAATATATGAGTATCT