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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGAGAGAAGCACGGACTTATGGAGACGTGCAGCTGATGCCATTTGTTGACTACTACAGCCTCATCACCTGGAAATCTTTAGCTATCTGCATTTTTGGGgtaatgatttgtctcttactttgatttggagaatctctccttagcctcattgaattgatctcttcaacag

Basic information

species Glycine max
transcript GLYMA01G05860.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G05860.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv14s0108g00890.t01 (Vitis vinifera), 5'ss of exon 4
GTGGAGAGAAGCACGGACTTATGGAGACGTGCAGCTGATGCCATTTGTTGACTACTACAGCCTCATCACCTGGAAATCTTTAGCTATCTGCATTTTTGGGgtaatgatttgtctcttactt-tgatttggagaatctctccttagcctcattgaattgatctcttcaacag
 ||||  || |  | ||| ||||||||| | ||||||||||| ||||||||||| ||||| || || ||||||||  |  |||| || ||||| |||||||||||  |    ||| | ||  |||    || | | | || |  |      | | ||  ||| || || ||
CTGGAAGGAGGTGCAGACATATGGAGACATTCAGCTGATGCCTTTTGTTGACTATTACAGTCTTATAACCTGGAAGACCATAGCAATTTGCATCTTTGGGgtaattttccacctccttctggtgacaaagaaagtttatcatatgt---gctcatttcctctttttaatag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192312704|gb|FK004392.1|FK004392
EST:     ACTACTACAGCCTCATCACCTGGAAATCTTTAGCTATCTGCATTTTTGGG                         ACACAAGTTTCTGCAAAGTTTGTCATGAAGACAGATGATGATGCATTTGTC
genomic: ACTACTACAGCCTCATCACCTGGAAATCTTTAGCTATCTGCATTTTTGGGgtaatgattt ... tcttcaacagACACAAGTTTCTGCAAAGTTTGTCATGAAGACAGATGATGATGCATTTGTC
EST: gi|22525497|gb|BU084308.1|BU084308
EST:     ACTACTACAGCCTCATCACCTGGAAATCTTTAGCTATCTGCATTTTTGGG                         ACACAAGTTTCTGCAAAGTTTGTCATGAAGACAGATGATGATGCATTTGTC
genomic: ACTACTACAGCCTCATCACCTGGAAATCTTTAGCTATCTGCATTTTTGGGgtaatgattt ... tcttcaacagACACAAGTTTCTGCAAAGTTTGTCATGAAGACAGATGATGATGCATTTGTC
EST: gi|16995698|gb|BM085070.1|BM085070
EST:     ACTACTACAGCCTCATCACCTGGAAATCTTTAGCTATCTGCATTTTTGGG                         ACACAAGTTTCTGCAAAGTTTGTCATGAAGACAGATGATGATGCATTTGTC
genomic: ACTACTACAGCCTCATCACCTGGAAATCTTTAGCTATCTGCATTTTTGGGgtaatgattt ... tcttcaacagACACAAGTTTCTGCAAAGTTTGTCATGAAGACAGATGATGATGCATTTGTC
EST: gi|11412343|gb|BF424354.1|BF424354
EST:     ACTACTACAGCCTCATCACCTGGAAATCTTTAGCTATCTGCATTTTTGGG                         ACACAAGTTTCTGCAAAGTTTGTCATGAAGACAGATGATGATGCATTTGTC
genomic: ACTACTACAGCCTCATCACCTGGAAATCTTTAGCTATCTGCATTTTTGGGgtaatgattt ... tcttcaacagACACAAGTTTCTGCAAAGTTTGTCATGAAGACAGATGATGATGCATTTGTC
EST: gi|208288714|gb|GE087527.1|GE087527
EST:     ACTACTACAGCCTCATCACCTGGAAATCTTTAGCTATCTGCATTTTTGGG                         ACACAAGTTTCTGCAAAGTTTGTCATGAAGAC
genomic: ACTACTACAGCCTCATCACCTGGAAATCTTTAGCTATCTGCATTTTTGGGgtaatgattt ... tcttcaacagACACAAGTTTCTGCAAAGTTTGTCATGAAGAC
EST: gi|192312705|gb|FK004393.1|FK004393
EST:     ACTACTACAGCCTCATCACCTGGAAATCTTTAGCTATCTGCATTTTTGGG                         ACACAAGTTTCTGCAAAGTTTGTCATGAAGACAGATGATGATGCATTTGTC
genomic: ACTACTACAGCCTCATCACCTGGAAATCTTTAGCTATCTGCATTTTTGGGgtaatgattt ... tcttcaacagACACAAGTTTCTGCAAAGTTTGTCATGAAGACAGATGATGATGCATTTGTC