1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
AATTGCAGAAGCAGAACGTCAGTTCTTGGATGCTGAATATGATGAGTATGCTGCTTCCAACGCCAGTGGAGCTGCATTTTGCCGCTCAGCTGCTTTAATTgtaaggcttaaccttgcttttgtttttaccaaatttaattggtggccatgctacatgacaatgagataaatgtagacttaggtagtgtttgaccaaggtc...
species | Glycine max |
transcript | GLYMA01G05800.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CTGCTTCCAACGCCAGTGGAGCTGCATTTTGCCGCTCAGCTGCTTTAATT TTAATGGCCCTTTTACTCCTGCGGCATGCACTTTCTGTCTCAGATGGTGATEST: gi|254321831|gb|GR837245.1|GR837245
genomic: CTGCTTCCAACGCCAGTGGAGCTGCATTTTGCCGCTCAGCTGCTTTAATTgtaaggctta ... tttggtgcagTTAATGGCCCTTTTACTCCTGCGGCATGCACTTTCTGTCTCAGATGGTGAT
EST: CTGCTTCCAACGCCAGTGGAGCTGCATTTTGCCGCTCAGCTGCTTTAATT TTAATGGCCCTTTTACTCCTGCGGCATGCACTTTCTGTCTCAGATGGTGATEST: gi|31471470|gb|CD413498.1|CD413498
genomic: CTGCTTCCAACGCCAGTGGAGCTGCATTTTGCCGCTCAGCTGCTTTAATTgtaaggctta ... tttggtgcagTTAATGGCCCTTTTACTCCTGCGGCATGCACTTTCTGTCTCAGATGGTGAT
EST: GCTGCATTGTGCCGCTCAGCTGCTTTTAATT TTAATGGCCCTTTTACTCCTGCGGCATGCACTTTCTGTCTCAGATGGTGAEST: gi|151400968|gb|EV270782.1|EV270782
genomic: GCTGCATTTTGCCGCTCAGCTGC-TTTAATTgtaaggctta ... tttggtgcagTTAATGGCCCTTTTACTCCTGCGGCATGCACTTTCTGTCTCAGATGGTGA
EST: CTGCTTCCAACGCCAGTGGAGCTGCATTTTGTCGCTCAGCTGCTTTAATT TTAATGGCCCTTTTACTCCTGCGGCATGCACTTTCTGTCTCAGATGGTGATEST: gi|15001277|gb|BI322091.1|BI322091
genomic: CTGCTTCCAACGCCAGTGGAGCTGCATTTTGCCGCTCAGCTGCTTTAATTgtaaggctta ... tttggtgcagTTAATGGCCCTTTTACTCCTGCGGCATGCACTTTCTGTCTCAGATGGTGAT
EST: CTGCTTCCAACGCCAGTGGAGCTGCATTTTGCCGCTCAGCTGCTTTAATT TTAATGGCCCTTTTACTCCTGCGGCATGCACTTTCTGTCTCAGATGGTGATEST: gi|208141660|gb|GD939516.1|GD939516
genomic: CTGCTTCCAACGCCAGTGGAGCTGCATTTTGCCGCTCAGCTGCTTTAATTgtaaggctta ... tttggtgcagTTAATGGCCCTTTTACTCCTGCGGCATGCACTTTCTGTCTCAGATGGTGAT
EST: CTGCTTCCAACGCCAGTGGAGCTGCATTTTGCCGCTCAGCTGCTTTAATT TTAATGGCCCTTTTACTCCTGCGGCATGCACTTTCTGTCTCAGATEST: gi|254340833|gb|GR854561.1|GR854561
genomic: CTGCTTCCAACGCCAGTGGAGCTGCATTTTGCCGCTCAGCTGCTTTAATTgtaaggctta ... tttggtgcagTTAATGGCCCTTTTACTCCTGCGGCATGCACTTTCTGTCTCAGAT
EST: CTGCTTCCAACGCCAGTGGAGCTGCATTTTGCCGCTCAGCTGCTTTAATT TTAATGGCCCTTTTACTCCTGCGGCATGCACTTTCTGTCTCAGATGGTGAT
genomic: CTGCTTCCAACGCCAGTGGAGCTGCATTTTGCCGCTCAGCTGCTTTAATTgtaaggctta ... tttggtgcagTTAATGGCCCTTTTACTCCTGCGGCATGCACTTTCTGTCTCAGATGGTGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATTGCAGAAGCAGAACGTCAGTTCTTGGATGCTGAATATGATGAGTATGCTGCTTCCAACGCCAGTGGAGCTGCATTTTGCCGCTCAGCTGCTTTAATTgtaaggcttaaccttgcttttgtttttaccaaatttaattggtggccatgctacatgacaatgagataaatgtagacttaggtagtgtttgaccaaggtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttggtgg