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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTCCCTACTTGTCATTGATAGGGGGAACCAAGCCATCAGGGAGATCCAACTACACTTTGATGATTGTGCTTATCAATACGAAAATGGATTTCCACTTGgtaggctatatcagtcattcaatccaaattctttctcttgaaaatattctaattaaaaatgaagattgattgcaatcaatttgcag

Basic information

species Glycine max
transcript GLYMA01G03880.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G03880.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv01s0026g00330.t01 (Vitis vinifera), 5'ss of exon 5
TGCTCCCTACTTGTCATTGATAGGGGGAACCAAGCCATCAGGGAGATCCAACTACACTTTGATGATTGTGCTTATCAATACGAAAATGGATTTCCACTTGgtaggctatatcagtcattcaatccaaattctttctcttgaaaatattctaattaaaa-atgaagattgattgcaatcaatttgcag
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TGCTCCCTACTTGTCATAGACAGAGGAAACCAGGCAATTCGGGAGATCCAACTTCATTTTGATGACTGTGCTTATCAATATGGAAGTGGTTTCCCTCTAGgtaaactg----atccatccagtattgatctttgatacttctca-atcttgacaaatccatgtgaaatgttctccatga--ttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193644898|gb|FK588760.1|FK588760
EST:     ACTACACTTTGATGATTGTGCTTATCAATACGAAAATGGATTTCCACTTG                         GAATTGCAGTGCTCATTGGTGCTGGCTTCTTTGGTTATA
genomic: ACTACACTTTGATGATTGTGCTTATCAATACGAAAATGGATTTCCACTTGgtaggctata ... caatttgcagGAATTGCAGTGCTCATTGGTGCTGGCTTCTTTGGTTATA
EST: gi|193529577|gb|FK484852.1|FK484852
EST:     ACTACACTTTGATGATTGTGCTTATCAATACGAAAATGGNTTTCCACTTG                         GAATTGCAGTGCTCATTGGTGCTGGCTTCTTTGGTTATA
genomic: ACTACACTTTGATGATTGTGCTTATCAATACGAAAATGGATTTCCACTTGgtaggctata ... caatttgcagGAATTGCAGTGCTCATTGGTGCTGGCTTCTTTGGTTATA
EST: gi|208079701|gb|GD873719.1|GD873719
EST:     ACTACACTTTGATGATTGTGCTTATCAATACGAAAATGGATTTCCACTTG                         GAATTGCAGTGCTCATTGGTGCTGGCTTCTTTGGTTATATGCTTGCATTAT
genomic: ACTACACTTTGATGATTGTGCTTATCAATACGAAAATGGATTTCCACTTGgtaggctata ... caatttgcagGAATTGCAGTGCTCATTGGTGCTGGCTTCTTTGGTTATATGCTTGCATTAT