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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTTGGGATACTAGAACATTGACTCTTATCAAGACATATGTCACAGAACGGCCGGTCAATGCAGTTGCAATGTCACCTCTACTTGATCATgtatgtatctgtgtgttgtaaattagttaaccttgtgttgtgatattcttgtcatttatctatgcaagtaatttttcttctgctttatttgattgaggtc...

Basic information

species Glycine max
transcript GLYMA01G03610.2
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G03610.2 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os08g21660.1 (Oryza sativa), 5'ss of exon 4
CTTTGGGATACTAGAACATTGACTCTTATCAAGACATATGTCACAGAACGGCCGGTCAATGCAGTTGCAATGTCACCTCTACTTGATCATgtatgtatctgtgtgttgtaaattagttaaccttgtgttg-tgatattcttgtcatttatctatgcaagtaatttttcttctgctttatttgattgaggtc
|| |||||||| |||||  |||| || ||||||||||||||||| || || || || ||||| ||||  || || ||||| ||||| |||||||||  || |||      |  || | |  ||| | | | ||  |||||| |    |  |  | ||  |  |  | | |    ||  || | || | |||
CTATGGGATACAAGAACTCTGACGCTGATCAAGACATATGTCACTGAGCGACCTGTTAATGCTGTTGACATTTCTCCTCTTCTTGACCATgtatgtgcctatgtcacaatacgtaat-attcttctataggtgcaattcttttataatcacgttacatatggtcatgccttaagttacttggttttatgtc

upper sequence: GLYMA01G03610.2 (Glycine max), 5'ss of exon 5
lower sequence: Vv01s0011g06630.t01 (Vitis vinifera), 5'ss of exon 5
CTTTGGGATACTAGAACATTGACTCTTATCAAGACATATGTCACAGAACGGCCGGTCAATGCAGTTGCAATGTCACCTCTACTTGATCATgtatgtatctgtgtgttgtaaattagttaaccttgtgttgtgatattcttgtcatttatctatgcaagtaatttttcttctgc---tttatttgat-tgaggtc
|||||||| |  || || || || ||||||||||| ||| | |||||||| ||||||||||||||| ||||||| || || |||||||||||||||||   || | | | || |  | ||  ||   || |        |||  || ||   || | | |  ||| |   | |   || |  | |  |||  | 
CTTTGGGACAGCAGGACGTTAACACTTATCAAGACCTATCTAACAGAACGCCCGGTCAATGCAGTTACAATGTCTCCACTTCTTGATCATgtatgtattgatgagatattaactgttaaatatt---ttatatctcctctgtatttcattggtg-atgcacctttcccattacaagttaacataaaatgaactt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209726207|gb|BW659572.1|BW659572
EST:     CACAGAACGGCCGGGTCA-TGCAGTTGCAATGTCACCTCTACTTGATCAT                         GTGGTACTTGGAGGTGGTCAGGATGCATCAGCTGTTACTACTACTGATCAT
genomic: CACAGAACGGCCGG-TCAATGCAGTTGCAATGTCACCTCTACTTGATCATgtatgtatct ... ctgtgtgtagGTGGTACTTGGAGGTGGTCAGGATGCATCAGCTGTTACTACTACTGATCAT
EST: gi|207842792|gb|GD816436.1|GD816436
EST:     TCACAGAACGGCCGGTCAATGCAGTTGCAATGTCACCTCTACTTGATCAT                         GTGGTACTTGGAGGTGGTCAGGATGCATCAGCTGTTACTACTACTGATCAT
genomic: TCACAGAACGGCCGGTCAATGCAGTTGCAATGTCACCTCTACTTGATCATgtatgtatct ... ctgtgtgtagGTGGTACTTGGAGGTGGTCAGGATGCATCAGCTGTTACTACTACTGATCAT
EST: gi|193639608|gb|FK587053.1|FK587053
EST:     TCAATGCAGTTGCAATGTCACCTCTACTTGATCAT                         GTGGTACTTGGAGGTGGTCAGGATGCATCAGCTGTTACTACTACTGATCAT
genomic: TCAATGCAGTTGCAATGTCACCTCTACTTGATCATgtatgtatct ... ctgtgtgtagGTGGTACTTGGAGGTGGTCAGGATGCATCAGCTGTTACTACTACTGATCAT
EST: gi|213604401|gb|DB983489.1|DB983489
EST:     CACAGAACGGCCGGTCAATGCAGTTGCAATGTCACCTCTACTTGATCAT                         GTGGTACTTGGAGGTGGTCAGGATGCATCAGCTGTTACTACTACTGATCAT
genomic: CACAGAACGGCCGGTCAATGCAGTTGCAATGTCACCTCTACTTGATCATgtatgtatct ... ctgtgtgtagGTGGTACTTGGAGGTGGTCAGGATGCATCAGCTGTTACTACTACTGATCAT
EST: gi|209726208|gb|BW659573.1|BW659573
EST:     TCACAGAACGGCCGGTCAATGCAGTTGCAATGTCACCTCTACTTGATCAT                         GTGGTACTTGGAGGTGGTCAGGATGCATCAGCTGTTACTACTACTGATCAT
genomic: TCACAGAACGGCCGGTCAATGCAGTTGCAATGTCACCTCTACTTGATCATgtatgtatct ... ctgtgtgtagGTGGTACTTGGAGGTGGTCAGGATGCATCAGCTGTTACTACTACTGATCAT
EST: gi|193449022|gb|FK413817.1|FK413817
EST:     CGGCCGGTCAATGCAGTTAGCAATGTCACCTCTACTTGATCAT                         GTGGTACTTGGAGGTGGTCAGGATGCATCAGCTGTTACTACTACTGATCAT
genomic: CGGCCGGTCAATGCAGTT-GCAATGTCACCTCTACTTGATCATgtatgtatct ... ctgtgtgtagGTGGTACTTGGAGGTGGTCAGGATGCATCAGCTGTTACTACTACTGATCAT
EST: gi|207774007|gb|GD745523.1|GD745523
EST:     ACGGCCGGTCAATGCAGTTGCAATGTCACCTCTACTTGATCAT                         GTGGTACTTGGAGGTGGTCAGGATGCATCAGCTGTTACTACTACTGATCAT
genomic: ACGGCCGGTCAATGCAGTTGCAATGTCACCTCTACTTGATCATgtatgtatct ... ctgtgtgtagGTGGTACTTGGAGGTGGTCAGGATGCATCAGCTGTTACTACTACTGATCAT