Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATGTGATGCAGTTGCTGTTGCAAAGATACTGAATGCTACTCTGGTGATCCCATACCTTGAACTGAATCCTGTATGGCGAGATTCAAGgtaattgacaacaccattattatatttatttgtccgatggattgtgtgcgatgaaatgttgaggttgcttatgtttgactgcag

Basic information

species Glycine max
transcript GLYMA01G02850.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G02850.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os09g24570.1 (Oryza sativa), 5'ss of exon 5
ATATGTGATGCAGTTGCTGTTGCAAAGATACTGAATGCTACTCTGGTGATCCCATACCTTGAACTGAATCCTGTATGGCGAGATTCAAGgtaattgacaacaccattattatatttatttgtccgatggattgtgtgcgatgaaatgttgag-gttgcttatgtttg---actgcag
||||||||||| ||||||||||| || || ||||||||  |||| ||||||||| | |||||| | |||||||| |||  |||  ||||||  ||    |  |    |  |  | ||||| |    |  ||| |   |  |  ||| || ||  | | |||  |||    | || ||
ATATGTGATGCGGTTGCTGTTGCTAAAATTCTGAATGCGTCTCTTGTGATCCCACATCTTGAAGTAAATCCTGTTTGGAAAGACACAAGgtgcttttggagtctcggagcac-tatatttttaatttccattttccactgttgaattttaagtatagtttacctttttgtattgtag

upper sequence: GLYMA01G02850.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G057037_T01 (Zea mays), 5'ss of exon 5
ATATGTGATGCAGTTGCTGTTGCAAAGATACTGAATGCTACTCTGGTGATCCCATACCTTGAACTGAATCCTGTATGGCGAGATTCAAGgt--------aattgacaacaccat-tattatatttatttgt-----ccgatggattgtgtgcgatgaaatgttgaggtt-gcttatgtttgactgcag
|||||||||||  |||| ||||||||||| || ||||||||||| ||||||||| | |||||| | || ||||| |||   ||||||||||        | ||   |||   || |   || ||    |||     | ||   ||| | |   ||  | | |   ||||   || |   || ||||||
ATATGTGATGCCATTGCAGTTGCAAAGATTCTTAATGCTACTCTTGTGATCCCACATCTTGAAGTAAACCCTGTTTGGAAGGATTCAAGgtgcctctgtagtttgaaactatatattccatgttctcctgttgaggcagaaatatttttttttatatattatactggttcattttttcctggctgcag

upper sequence: GLYMA01G02850.1 (Glycine max), 5'ss of exon 5
lower sequence: AT5G65470.1 (Arabidopsis thaliana), 5'ss of exon 4
-----------ATATGTGATGCAGTTGCTGTTGCAAAGATACTGAATGCTACTCTGGTGATCCCATACCTTGAACTGAATCCTGTATGGCGAGATTCAAGgtaattgac----aacaccattattatatttatttgtccgatggattgtgtgcgatgaaatgttgag-gttgcttatgtttgactgcag
           ||||||||||| ||||| ||||| |||||  | || || || || |||||||| || |||||| |||||||||| |||| ||||||||||||||        || |    | |  | || |   ||    | | |     |  |    |||||| | |||  || | | ||  |||||
AACGAATGGGAATATGTGATGCTGTTGCAGTTGCGAAGATTTTAAACGCAACACTCGTGATCCCTTATCTTGAAGTGAATCCTGTGTGGCAAGATTCAAGgtaatgtttcttgaaaaattctctgctgttgaagagttgtgttgttgcctcggaagctgatgttgtgtgttttttctttctgtgtgcag

upper sequence: GLYMA01G02850.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv00s0313g00030.t01 (Vitis vinifera), 5'ss of exon 5
ATATGTGATGCAGTTGCTGTTGCAAAGATACTGAATGCTACTCTGGTGATCCCATACCTTGAACTGAATCCTGTATGGCGAGATTCAAGgtaattgacaacaccattattatatttatttgtccga---------tggattgtgtgcgatgaaatgttgaggttgcttatgtttgactgcag
|| |||||||| ||||||||||| |||||| | |||||||| || ||||||||| | |||||| |||||||||| ||||| ||||| ||||| ||       | |  ||  || ||| || | |           | | || |  |     | ||  ||| || || |   |||  ||||||
ATTTGTGATGCTGTTGCTGTTGCTAAGATATTAAATGCTACACTTGTGATCCCACATCTTGAAGTGAATCCTGTTTGGCGGGATTCGAGgtagttttttgttcaagcatc-tacttactttttcatgaaccttattagtttttagggagacatattctgaagtggcattcttttttctgcag

upper sequence: GLYMA01G02850.1 (Glycine max), 5'ss of exon 5
lower sequence: PP1S215_43V6.1 (Physcomitrella patens), 5'ss of exon 5
ATATGTGATGCAGTTGCTGTTGCAAAGATACTGAATGCTACTCTGGTGATCCCATACCTTGAACTGAATCCTGTATGGCGAGATTCAAGgtaattgacaacaccattattatatttatttgtccgatggattgtgtgcgatgaaatgttgaggttgcttatgtttgactgcag---------------------
|| |||||||| |||||||||||||| || |||||||| ||||| ||  | ||  |  | ||  | ||||| || |||  ||| || |||||   |   |   || |   |   || |||     || |||||| |   || ||      ||  | ||  || ||   || ||                     
ATTTGTGATGCGGTTGCTGTTGCAAAAATTCTGAATGCAACTCTTGTTCTTCCTCATTTCGATGTTAATCCAGTTTGGAAAGACTCCAGgta--cgcagaagtcaattccacgcttgttttgt--attgattgt-taacataaagccaaaagagtactactgattttttggagattgtcacttcgcgggtcttt

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7147128|gb|AW509050.1|AW509050
EST:     ACTCTGGTGATCCCATACCTTGAACTGAATCCTGTATGGCGAGATTCAAG                         CTCCTTCATGGATATATNTGATGTGGATCATTTCATTGATGTATTGAAGGA
genomic: ACTCTGGTGATCCCATACCTTGAACTGAATCCTGTATGGCGAGATTCAAGgtaattgaca ... ttgactgcagCTCCTTCATGGATATATTTGATGTGGATCATTTCATTGATGTATTGAAGGA
EST: gi|26043675|gb|CA782127.1|CA782127
EST:     ACTCTGGTGATCCCATACCTTGAACTGAATCCTGTATGGCGAGATTCAAG                         CTCCTTCATGGATATATTTGATGTGGATCATTTCATTGATGTATTGAAGGA
genomic: ACTCTGGTGATCCCATACCTTGAACTGAATCCTGTATGGCGAGATTCAAGgtaattgaca ... ttgactgcagCTCCTTCATGGATATATTTGATGTGGATCATTTCATTGATGTATTGAAGGA
EST: gi|7147562|gb|AW509484.1|AW509484
EST:     ACTCTGGTGATCCCATACCTTGAACTGAATCCTGTACGGCGAGATTCAAG                         CTCCTTCATGGATATATTTGATGTGGATCATTTCATTGATGTATTGAAGGA
genomic: ACTCTGGTGATCCCATACCTTGAACTGAATCCTGTATGGCGAGATTCAAGgtaattgaca ... ttgactgcagCTCCTTCATGGATATATTTGATGTGGATCATTTCATTGATGTATTGAAGGA