Sequence
atgc intronic sequence ATGC exonic sequenceGTGGATATGATAAGGAAGAAAAGGCCGCGAGAGCTTATGATTTGGCAGCTCTAAAGTACTGGGGTCCCACTGCTACCACCAACTTCCCTgtaatgcagtcacatctttcttgtattcagttttgatagatattagttgcatgaaatccaatacatatatataccaggactgaaaacgttgaggtggggc...
Basic information
species | Glycine max |
transcript | GLYMA01G02760.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA01G02760.1 (Glycine max), 5'ss of exon 5
lower sequence: AT5G10510.3 (Arabidopsis thaliana), 5'ss of exon 5
GTGGATATGATAAGGAAGAAAAGGCCGCGAGAGCTTATGATTTGGCAGCTCTAAAGTACTGGGGTCCCACTGCTACCACCAACTTCCCTgtaatgcagtcacatctttct-tgtattcagttttgatagatattagttgcatgaaatccaatacatatatataccaggactgaaaacgttgaggtggggc
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GTGGATATGACAAAGAAGATAAGGCAGCTCGAGCTTACGATTTAGCAGCTCTGAAATACTGGAATGCTACTGCTACCACCAATTTCCCTgtaa----gtaccttctttctctgtatccattagtagtttatataacttg-------ttcaatcttttccta-atccgttctaatgatatttag-------
upper sequence: GLYMA01G02760.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv00s1291g00010.t01 (Vitis vinifera), 5'ss of exon 4
GTGGATATGATAAGGAAGAAAAGGCCGCGAGAGCTTATGATTTGGCAGCTCTAAAGTACTGGGGTCCCACTGCTACCACCAACTTCCCTgtaatgcagtcacatctttcttgtattcagttttgatagatattagttgcatgaaatccaa-tacatatatat-accaggact--gaaaacgttgaggtggggc----------
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GTGGGTATGACAAGGAAGAAAAGGCAGCAAGGGCCTATGATTTAGCAGCTCTAAAGTACTGGGGTGCTTCTGCAACTACCAATTTCCCTgtaatatatatgctcttctaaaactctcaattctgtgaaccactttttgctggatggagaactacttacccattatgaggactttgttaaccaggtagttggcatttctttcag
upper sequence: GLYMA01G02760.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv00s0772g00020.t01 (Vitis vinifera), 5'ss of exon 3
GTGGATATGATAAGGAAGAAAAGGCCGCGAGAGCTTATGATTTGGCAGCTCTAAAGTACTGGGGTCCCACTGCTACCACCAACTTCCCTgtaatgcagtcacatctttcttgtattcagttttgatagata---ttagttgcatgaaatccaatacatatatataccaggact--gaaaacgttgaggtggggc----------
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GTGGGTATGACAAGGAAGAAAAGGCAGCAAGGGCCTATGATTTAGCAGCTCTAAAGTACTGGGGTGCTTCTGCAACTACCAATTTCCCTgtaatatatatgctcttctaaaactctcaattctgtgaaccactttttgctgcatggagaactacttacccat-tatgaggactttgttaaccaggtagttggcatttctttcag
upper sequence: GLYMA01G02760.1 (Glycine max), 5'ss of exon 5
lower sequence: PP1S131_139V6.1 (Physcomitrella patens), 5'ss of exon 3
---------GTGGATATGATAAGGAAGAAAAGGCCGCGAGAGCTTATGATTTGGCAGCTCTAAAGTACTGGGGTCCCACTGCTACCACCAACTTCCCTgtaa-------------tgcagtcacatctttcttgtattca-----gttttgatagatattagttgcatgaaatccaatacatat----------atataccaggactgaaaacgttgaggtggggc--------------------------------------
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TATACTTAGGAGGATATGATAAAGAAGAAAAGGCAGCCAGAGCCTACGACTTGGCAGCGCTCAAATACTGGGGTCCCAGCACCACCATCAACTTTCCGgtaagtcatgaatcgtgtgccgtcatgtcattctgccgctaattaatgtgtccacaagtattctgagcttgacg-ccaaggcatgtggcgagcgtgatgctctgagcttagcagttctgaggaacggtgcctcatgcacgtggaatggtggaatgttgtgcgacag
upper sequence: GLYMA01G02760.1 (Glycine max), 5'ss of exon 5
lower sequence: EFJ16224 (Selaginella moellendorffii), 5'ss of exon 2
GTGGATATGATAAGGAAGAAAAGGCCGCGAGAGCTTATGATTTGGCAGCTCTAAAGTACTGGGGTCCCACTGCTACCACCAACTTCCCTgtaa----tgcagtcacatc-----tttcttgtattcagttttgatagatatt--agttgcatgaaatccaatacatatatataccaggactgaaaacgttgaggtggggc
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GGGGATATGATGCGGAGGAGAAGGCAGCAAGAGCTTACGATCTGGCAGCTCTCAAGTACTGGGGGCCTACGACAACTACAAACTTTCCGgtaagaactaatgtgacaacgtaagttttttctttgcaagctc-acagattttctggttgtgttgaag-------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|17964787|gb|BM271516.1|BM271516EST: CCACTGCTACCACCAACTTCCCT GTTTCCAATTATTCGAAGGAAGTGGAGGAGATGAAACATGTAACAAAGCAA
genomic: CCACTGCTACCACCAACTTCCCTgtaatgcagt ... catttctcagGTTTCCAATTATTCGAAGGAAGTGGAGGAGATGAAACATGTAACAAAGCAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTGGATATGATAAGGAAGAAAAGGCCGCGAGAGCTTATGATTTGGCAGCTCTAAAGTACTGGGGTCCCACTGCTACCACCAACTTCCCTgtaatgcagtcacatctttcttgtattcagttttgatagatattagttgcatgaaatccaatacatatatataccaggactgaaaacgttgaggtggggc
- - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggtgggg