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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGATCTTATCCTTTTAGTCCTTTTGCCATGCCTTCTCCAAATGGCATTGCTGAGGCATCAgtgagttttccccttttgtttttttgtgctcattctcaccttgtctttgtctgtcttttccctcttctgtgcaaaacttgttcttatccgagtaaggaaaaataatctattagttttcatgcag

Basic information

species Glycine max
transcript GLYMA01G01740.2
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G01740.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv02s0012g02250.t01 (Vitis vinifera), 5'ss of exon 6
GGATCTTATCCTTTTAGTCCTTTTGCCATGCCTTCTCCAAATGGCATTGCTGAGGCATCAgtgagtt--ttccccttttgtttttttgtgctcattctcaccttgtctttgtctgtcttttccctcttctgtgcaa-aacttgttcttatccgagtaaggaaaaataatctattagttttcatgcag
|||||||||||||| ||||||||||| ||||||||||||||||||||||||||| | || |||||||  ||   ||  ||| |  ||  |     |      | | | |  ||| | ||        |||||  || |||||||   | | |  |||                              
GGATCTTATCCTTTCAGTCCTTTTGCTATGCCTTCTCCAAATGGCATTGCTGAGACCTCTgtgagttaattaagctactgtatcatttggtctgctgctgagtagacatattct-ttttcatatggatctgtagaataacttgtaaattttcatgtag-----------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21255865|gb|BQ452753.1|BQ452753
EST:     CTTTTAGTCCTTTTGCCATGCCTTCTCCAAATGGCATTGCTGAGGCATCA                         GGAAACACTCCTGGCAGCATGGAAGCTGATGGTAAACCTCCTGAGGTGAAG
genomic: CTTTTAGTCCTTTTGCCATGCCTTCTCCAAATGGCATTGCTGAGGCATCAgtgagttttc ... tttcatgcagGGAAACACTCCTGGCAGCATGGAAGCTGATGGTAAACCTCCTGAGGTGAAG