Sequence
atgc intronic sequence ATGC exonic sequenceTGCTGGAGTGATTCTTGGTACTGGGACAAATGCAGCTTATGTAGAGTGTGCACATGCAATTCCAAAATGGCATGGTCTTCTACCAAAATCAGGAGAGATGgtaaacagattatatgacacttattttcttgtgtgatagaactgtgtttataatgattccatgaggcagctaatgggatggtaatgattatttattgattctatag
Basic information
species | Glycine max |
transcript | GLYMA01G01060.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA01G01060.1 (Glycine max), 5'ss of exon 5
lower sequence: AT2G19860.2 (Arabidopsis thaliana), 5'ss of exon 4
TGCTGGAGTGATTCTTGGTACTGGGACAAATGCAGCTTATGTAGAGTGTGCACATGCAATTCCAAAATGGCATGGTCTTCTACCAAAATCAGGAGAGATGgtaaacagattatatgacacttattttcttgtgtgatagaactgtgtttataatgattccatgaggcagctaatgggatggtaatgattatttattgattctatag
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TGTCGCAGTTATTTTGGGCACCGGCACAAATGCAGCCTATGTCGAACGTGCACATGCAATTCCCAAATGGCATGGTTTGCTACCCAAATCAGGAGAAATGgt-------ttgtgt---------tttcgaataaaacataacaactccaattgagctttcaagtacctgtt--tcatcttatagtatgtatgtacc-acaatgtag
upper sequence: GLYMA01G01060.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv11s0016g03070.t01 (Vitis vinifera), 5'ss of exon 5
TGCTGGAGTGATTCTTGGTACTGGGACAAATGCAGCTTATGTAGAGTGTGCACATGCAATTCCAAAATGGCATGGTCTTCTACCAAAATCAGGAGAGATGgtaaacagatta--tatgacacttattttct--tgtgtgat-agaactgtgtttataatgattccatgaggcagctaatgggatggtaatgattatttattgattctatag---------------------------------------------------------------------------------------------
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TGCTGCAGTGATCTTGGGTACTGGAACAAATGCAGCCTATGTAGAACGGGCACAGTCAATTCCCAAGTGGCATGGTCTCCTACCGAAATCTGGAGATATGgttagcagttctcttataatttccatctattgatatgtgattaggaatgtactatccatc-ttctattaaa-aacaaa--aaatcttgacttttttttaatgtctctttcctgatatagaaatgtttctgtggtttggaacctagtatacaagttatgctattatgtcggaagataaataattttcttaataaaatttctgtagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|16348134|gb|BI973729.1|BI973729EST: CACATGCAATTCCAAAATGGCATGGTCTTCTACCAAAATCAGGAGAGATG GTTATTAACATGGAGTGGGGTAATTTCCGTTCCTCGCATCTTCCTCTAACA
genomic: CACATGCAATTCCAAAATGGCATGGTCTTCTACCAAAATCAGGAGAGATGgtaaacagat ... gattctatagGTTATTAACATGGAGTGGGGTAATTTCCGTTCCTCGCATCTTCCTCTAACA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGCTGGAGTGATTCTTGGTACTGGGACAAATGCAGCTTATGTAGAGTGTGCACATGCAATTCCAAAATGGCATGGTCTTCTACCAAAATCAGGAGAGATGgtaaacagattatatgacacttattttcttgtgtgatagaactgtgtttataatgattccatgaggcagctaatgggatggtaatgattatttattgattctatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG