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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCATTCATGGTGATAGTTCGGAACAAGAAACGTGTTGGTTACACATATGAGTTGAGCTTAAAAGTCAAAGgtgaggtactatcaaccattctttttaacgatttcaatctagctgttctttattcttttttatttgtttcaatctaattactttataagccatgctgatttgcaaagggatgtag

Basic information

species Glycine max
transcript GLYMA01G00400.3
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58016689|gb|CX703431.1|CX703431
EST:     GAACAAGAAACGTGTTGGTTACACATATGAGTTGAGCTTAAAAGTCAAAG                         GGGAATGGATCATACAAGGAGAGAAGAAGTTCGTTGGGGGTCATATAGATG
genomic: GAACAAGAAACGTGTTGGTTACACATATGAGTTGAGCTTAAAAGTCAAAGgtgaggtact ... agggatgtagGGGAATGGATCATACAAGGAGAGAAGAAGTTCGTTGGGGGTCATATAGATG
EST: gi|4301456|gb|AI443193.1|AI443193
EST:     GAACAAGAAACGTGTTGGTTACACATATGAGTTGAGCTTAAAAGTCAAAG                         GGGAATGGATCATACAAGGAGAGAAGAAGTTCGTTGGGGGTCATATAGATG
genomic: GAACAAGAAACGTGTTGGTTACACATATGAGTTGAGCTTAAAAGTCAAAGgtgaggtact ... agggatgtagGGGAATGGATCATACAAGGAGAGAAGAAGTTCGTTGGGGGTCATATAGATG
EST: gi|192321735|gb|FK013169.1|FK013169
EST:     GAACAAGAAACGTGTTGGTTACACATATGAGTTGAGCTTAAAAGTCAAAG                         GGGAATGGATCATACAAGGAGAGAAGAAGTTCGTTGGGGGTCATATAGATG
genomic: GAACAAGAAACGTGTTGGTTACACATATGAGTTGAGCTTAAAAGTCAAAGgtgaggtact ... agggatgtagGGGAATGGATCATACAAGGAGAGAAGAAGTTCGTTGGGGGTCATATAGATG
EST: gi|151397594|gb|EV267467.1|EV267467
EST:     GAACAAGAAACGTGTTGGTTACACATATGAGTTGAGCTTAAAAGTCAAAG                         GGGAATGGATCATACAAGGAGAGAAGAAGTTCGTTGGGGGTCATATAGATG
genomic: GAACAAGAAACGTGTTGGTTACACATATGAGTTGAGCTTAAAAGTCAAAGgtgaggtact ... agggatgtagGGGAATGGATCATACAAGGAGAGAAGAAGTTCGTTGGGGGTCATATAGATG
EST: gi|192321033|gb|FK013521.1|FK013521
EST:     GAACAAGAAACGTGTTGGTTACACATATGAGTTGAGCTTAAAAGTCAAAG                         GGGAATGGATCATACAAGGAGAGAAGAAGTTCGTTGGGGGTCATATAGATG
genomic: GAACAAGAAACGTGTTGGTTACACATATGAGTTGAGCTTAAAAGTCAAAGgtgaggtact ... agggatgtagGGGAATGGATCATACAAGGAGAGAAGAAGTTCGTTGGGGGTCATATAGATG
EST: gi|298198431|gb|HO039970.1|HO039970
EST:     GAACAAGAAACGTGTTGGTTACACATATGAGTTGAGCTTAAAAGTCAAAG                         GGGAATGGATCATACAAGGAGAGAAGAAGTTCGTTGGGGGTCATATAGATG
genomic: GAACAAGAAACGTGTTGGTTACACATATGAGTTGAGCTTAAAAGTCAAAGgtgaggtact ... agggatgtagGGGAATGGATCATACAAGGAGAGAAGAAGTTCGTTGGGGGTCATATAGATG
EST: gi|192321032|gb|FK013520.1|FK013520
EST:     GAACAAGAAACGTGTTGGTTACACATATGAGTTGAGCTTAAAAGTCAAAG                         GGGAATGGATCATACAAGGAGAGAAGAAGTTCGTTGGGGGTCATATAGATG
genomic: GAACAAGAAACGTGTTGGTTACACATATGAGTTGAGCTTAAAAGTCAAAGgtgaggtact ... agggatgtagGGGAATGGATCATACAAGGAGAGAAGAAGTTCGTTGGGGGTCATATAGATG
EST: gi|151396743|gb|EV266616.1|EV266616
EST:     GAACAAGAAACGTGTTGGTTACACATATGAGTTGAGCTTAAAAGTCAAAG                         GGGAATGGATCATACAAGGAGAGAAGAAGTTCGTTGGGGGTCATATAGATG
genomic: GAACAAGAAACGTGTTGGTTACACATATGAGTTGAGCTTAAAAGTCAAAGgtgaggtact ... agggatgtagGGGAATGGATCATACAAGGAGAGAAGAAGTTCGTTGGGGGTCATATAGATG
EST: gi|58020236|gb|CX706978.1|CX706978
EST:     GAACAAGAAACGTGTTGGTTACACATATGAGTTGAGCTTAAAAGTCAAAG                         GGGAATGGATCATACAAGGAGAGAAGAAGTTCGTTGGGGGTCATATAGATG
genomic: GAACAAGAAACGTGTTGGTTACACATATGAGTTGAGCTTAAAAGTCAAAGgtgaggtact ... agggatgtagGGGAATGGATCATACAAGGAGAGAAGAAGTTCGTTGGGGGTCATATAGATG
EST: gi|18039895|gb|BM308189.1|BM308189
EST:     GAACAAGAAACGTGTTGGTTACACATATGAGTTGAGCTTAAAAGTCAAAG                         GGGAATGGATCATACAAGGAGAGAAGAAGTTCGTTGGGGGTCATATAGATG
genomic: GAACAAGAAACGTGTTGGTTACACATATGAGTTGAGCTTAAAAGTCAAAGgtgaggtact ... agggatgtagGGGAATGGATCATACAAGGAGAGAAGAAGTTCGTTGGGGGTCATATAGATG
EST: gi|192325606|gb|FK019462.1|FK019462
EST:     GAACAAGAAACGTGTTGATTACACATATGAGTTGAGCTTAAAAGTCAAAG                         GGGAATGGATCATACAAGGAGAGAAGAAGTTCGTTGGGGGTCATATAGATG
genomic: GAACAAGAAACGTGTTGGTTACACATATGAGTTGAGCTTAAAAGTCAAAGgtgaggtact ... agggatgtagGGGAATGGATCATACAAGGAGAGAAGAAGTTCGTTGGGGGTCATATAGATG
EST: gi|192321736|gb|FK013170.1|FK013170
EST:     GAACAAGAAACGTGTTGGTTACACATATGAGTTGAGCTTAAAAGTCAAAG                         GGGAATGGATCATACAAGGAGAGAAGAAGTTCGTTGGGGGTCATATAGATG
genomic: GAACAAGAAACGTGTTGGTTACACATATGAGTTGAGCTTAAAAGTCAAAGgtgaggtact ... agggatgtagGGGAATGGATCATACAAGGAGAGAAGAAGTTCGTTGGGGGTCATATAGATG
EST: gi|6847453|gb|AW349814.1|AW349814
EST:     GAACAAGAAACGTGTTGGTTACACATATGAGTTGAGCTTAAAAGTCAAAG                         GGGAATGGATCATACAAGGAGAGAAGAAGTTCGTTGGGGGTCATATAGATG
genomic: GAACAAGAAACGTGTTGGTTACACATATGAGTTGAGCTTAAAAGTCAAAGgtgaggtact ... agggatgtagGGGAATGGATCATACAAGGAGAGAAGAAGTTCGTTGGGGGTCATATAGATG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCATTCATGGTGATAGTTCGGAACAAGAAACGTGTTGGTTACACATATGAGTTGAGCTTAAAAGTCAAAGgtgaggtactatcaaccattctttttaacgatttcaatctagctgttctttattcttttttatttgtttcaatctaattactttataagccatgctgatttgcaaagggatgtag

- - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - -  GAGCTT