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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATTCAAATCAATTACTAAGGAAGTTTGCAAGCTGCCATCTTTTTTTTCCACTTCCCTTTTCCAGAAGATTGACAATGGAACTGGTGTTGTGACAAGgtgtgcaatttatttttctggaacttgttaacttttttgtgtcatgactcatagattatgattcttgtttgagctgttgggcatttcaaagttttaggtc...

Basic information

species Glycine max
transcript GLYMA20G36530.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G36530.1 (Glycine max), 5'ss of exon 4
lower sequence: AT5G28850.1 (Arabidopsis thaliana), 5'ss of exon 4
AATTCAAATCAATTACTAAGGAAGTTTGCAAGCTGCCATCTTTTTTTTCCACTTCCCTTTTCCAGAAGATTGA---CAATGGAACTGGTGTTGTGACAAGgtgtgcaatttatttttctggaacttgttaacttttttgtgtcatgactcatagattatgattcttgtttgagctgttgggcatttcaa-agttttaggtc--------------
||||||| | | | || |  ||| | |||||||| |||||||| || |||||||||||||||| |||||| ||   |||    || ||| |||| || |||||||    |  |  ||||     || ||   | | | |||      ||   |  |    ||  ||   |||         || |  || ||||||                   
AATTCAAGTTAGTCACCAGAGAAATCTGCAAGCTCCCATCTTTCTTCTCCACTTCCCTTTTCCGGAAGATCGATCTCAACAATACAGGTTTTGTTACTAGgtgtgtg-ctgctgcttctatgcttttttttttgtatggtgcttcctctt-catgtctgcatagtttactgaaacaccacccagtataacagttttgtcgtgtttgtttctacag

upper sequence: GLYMA20G36530.1 (Glycine max), 5'ss of exon 4
lower sequence: AT5G28900.1 (Arabidopsis thaliana), 5'ss of exon 4
AATTCAAATCAATTACTAAGGAAGTTTGCAAGCTGCCATCTTTTTTTTCCACTTCCCTTTTCCAGAAGATTGA---CAATGGAACTGGTGTTGTGACAAGgtgtgcaatttatttttctggaacttgttaacttttttgtgtcatgactcat----agattatgattcttgtttgagctgttgggcatttcaa-agttttaggtc-------------
||||||| | | | || |  ||| | |||||||| |||||||| || |||||||||||||||| |||||| ||   |||    || ||| |||| || |||||||       || ||||     || ||   |||||||| |  ||  || |    |  |    ||  ||   |||         || |  || ||||||  ||              
AATTCAAGTTAGTCACCAGAGAAATCTGCAAGCTCCCATCTTTCTTCTCCACTTCCCTTTTCCGGAAGATCGATCTCAACAATACAGGTTTTGTTACTAGgtgtgtg-ccgcttcttctatgctttttt--tttttttgtatggtgcttcctcttcatgtctgcatagtttactgaaacaccacccagtataacagtttttcgtgtttgtttctacag