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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGGTAAGGGGTCACGAGGTGATGTTACCATATTGCCTACTCTAGTTGTCAATAATAGACAGTATCGAGgtttgtactgtgtgcttctctgatagatattgatctggatttccaattcttaagcattcattttttgttccag

Basic information

species Glycine max
transcript GLYMA20G27000.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G27000.1 (Glycine max), 5'ss of exon 4
lower sequence: AT2G14720.2 (Arabidopsis thaliana), 5'ss of exon 5
GTTGGTAAGGGGTCACGAGGTGATGTTACCATATTGCCTACTCTAGTTGTCAATAATAGACAGTATCGAGgtttgtactgtgtgcttctctgatagatattgatctggatttccaattcttaagcattcattttttgttccag
||||| |||||  || | |||||||||||||||||||||||  |||||||||| || |||||||| |||||||||| | |     |||      |||  |  || |   |     |   |     ||     ||   || |||
GTTGGCAAGGGTACAAGGGGTGATGTTACCATATTGCCTACCTTAGTTGTCAACAACAGACAGTACCGAGgtttgttccgcagtgttcaacttgagacttcaatatatgtagtttagcttattttataatcgttccattgcag

upper sequence: GLYMA20G27000.1 (Glycine max), 5'ss of exon 4
lower sequence: AT2G14740.2 (Arabidopsis thaliana), 5'ss of exon 4
GTTGGTAAGGGGTCACGAGGTGATGTTACCATATTGCCTACTCTAGTTGTCAATAATAGACAGTATCGAGgtttgtactgtgtgcttctctgatagatattgat-ctggatttccaattcttaagcattcattttttgttccag
||||| ||||| ||| | |||||||||||||||||||||||  | |||||||| || |||||||| ||||||||||  |   |  ||  || | |||  |  || || |   |  |  | |     ||  || |||  || |||
GTTGGCAAGGGTTCAAGGGGTGATGTTACCATATTGCCTACCTTGGTTGTCAACAACAGACAGTACCGAGgtttgtcttacatagttaactta-agacttcaatacttgtagtttacctttgttaaataaatgtttccttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208225884|gb|GE024511.1|GE024511
EST:     TGATGTTACCATATTGCCTACTCTAGTTGTCAATAATAGACAGTATCGAG                         GAAAATTGGAGAAA
genomic: TGATGTTACCATATTGCCTACTCTAGTTGTCAATAATAGACAGTATCGAGgtttgtactg ... tttgttccagGAAAATTGGAGAAA
EST: gi|7233271|gb|AW568619.1|AW568619
EST:     TGATGTTACCATATTGCCTACTCTAGTTGTCAATAATAGACAGTATCGAG                         GAAAATTGGAGAAAGGTGCTGTTATGAAAGCTATCTGTGCTGGTTTTGAAG
genomic: TGATGTTACCATATTGCCTACTCTAGTTGTCAATAATAGACAGTATCGAGgtttgtactg ... tttgttccagGAAAATTGGAGAAAGGTGCTGTTATGAAAGCTATCTGTGCTGGTTTTGAAG
EST: gi|208216537|gb|GE012525.1|GE012525
EST:     TGATGTTACCATATTGCCTACTCTAGTTGTCAATAATAGACAGTATCGAG                         GAAAATAGGAGAAAGGTGCTGTTATGAAAGCTATCTGTGCTGGTTTTGAAG
genomic: TGATGTTACCATATTGCCTACTCTAGTTGTCAATAATAGACAGTATCGAGgtttgtactg ... tttgttccagGAAAATTGGAGAAAGGTGCTGTTATGAAAGCTATCTGTGCTGGTTTTGAAG
EST: gi|193364462|gb|FK333503.1|FK333503
EST:     TGATGTTACCATATTGCCTACTCTAGTTGTCAATAATAGACAGTATCGAG                         GAAAATTGGAGAAAGGTGCTGTTATGAAAGCTATCTGTGCTGGTTTTGAAG
genomic: TGATGTTACCATATTGCCTACTCTAGTTGTCAATAATAGACAGTATCGAGgtttgtactg ... tttgttccagGAAAATTGGAGAAAGGTGCTGTTATGAAAGCTATCTGTGCTGGTTTTGAAG
EST: gi|207757331|gb|GD727139.1|GD727139
EST:     TGATGTTACCATATTGCCTACTCTAGTTGTCAATAATAGACAGTATCGAG                         GAAAATTGGAGAAA
genomic: TGATGTTACCATATTGCCTACTCTAGTTGTCAATAATAGACAGTATCGAGgtttgtactg ... tttgttccagGAAAATTGGAGAAA
EST: gi|208031319|gb|GD827075.1|GD827075
EST:     TGATGTTACCATATTGCCTACTCTAGTTGTCAATAATAGACAGTATCGAG                         GAAAATTGGAGAAA
genomic: TGATGTTACCATATTGCCTACTCTAGTTGTCAATAATAGACAGTATCGAGgtttgtactg ... tttgttccagGAAAATTGGAGAAA
EST: gi|16997296|gb|BM086668.1|BM086668
EST:     TGATGTTACCATATTGCCTACTCTAGTTGTCAATAATAGGCAGTATCGAG                         GAAAATTGGAGAAAGGTGCTGTTATGAAAGCTATCTGTGCTGGTTTTGAAG
genomic: TGATGTTACCATATTGCCTACTCTAGTTGTCAATAATAGACAGTATCGAGgtttgtactg ... tttgttccagGAAAATTGGAGAAAGGTGCTGTTATGAAAGCTATCTGTGCTGGTTTTGAAG
EST: gi|207747467|gb|GD721642.1|GD721642
EST:     TGATGTTACCATATTGCCTACTCTAGTTGTCAATAATAGACAGTATCGAG                         GAAAATTGGAGAAA
genomic: TGATGTTACCATATTGCCTACTCTAGTTGTCAATAATAGACAGTATCGAGgtttgtactg ... tttgttccagGAAAATTGGAGAAA
EST: gi|37994040|gb|CF805786.1|CF805786
EST:     TGATGTTACCATATTGCCTACTCTAGTTGTCAATAATAGACAGTATCGAG                         GAAAATTGGAGAAAGGTGCTGTTATGAAAGCTATCTGTGCTGGTTTTGAAG
genomic: TGATGTTACCATATTGCCTACTCTAGTTGTCAATAATAGACAGTATCGAGgtttgtactg ... tttgttccagGAAAATTGGAGAAAGGTGCTGTTATGAAAGCTATCTGTGCTGGTTTTGAAG
EST: gi|193348579|gb|FK317711.1|FK317711
EST:     TGATGTTACCATATTGCCTACTCTAGTTGTCAATAATAGACAGTATCGAG                         GAAAATTGGAGAAAGGTGCTGTTATGAAAGCTATCTGTGCTGGTTTTGAAG
genomic: TGATGTTACCATATTGCCTACTCTAGTTGTCAATAATAGACAGTATCGAGgtttgtactg ... tttgttccagGAAAATTGGAGAAAGGTGCTGTTATGAAAGCTATCTGTGCTGGTTTTGAAG
EST: gi|208134174|gb|GD931351.1|GD931351
EST:     TGATGTTACCATATTGCCTACTCTAGTTGTCAATAATAGACAGTATCGAG                         GAAAATTGGAGAAAGGTGCTGTTATGAAAGCTATCTGTGCTGGTTTTGAAG
genomic: TGATGTTACCATATTGCCTACTCTAGTTGTCAATAATAGACAGTATCGAGgtttgtactg ... tttgttccagGAAAATTGGAGAAAGGTGCTGTTATGAAAGCTATCTGTGCTGGTTTTGAAG
EST: gi|193626746|gb|FK573670.1|FK573670
EST:     ACTCTAGTTGTCAATAATAGACAGTATCGAG                         GAAAATTGGAGAAAGGTGCTGTTATGAAAGCTATCTGTGCTGGTTTTGAAG
genomic: ACTCTAGTTGTCAATAATAGACAGTATCGAGgtttgtactg ... tttgttccagGAAAATTGGAGAAAGGTGCTGTTATGAAAGCTATCTGTGCTGGTTTTGAAG
EST: gi|151400595|gb|EV270409.1|EV270409
EST:     TGATGTTACCATATTGCCTACTCTAGTTGTCAATAATAGACAGTATCGAG                         GAAAATTGGAGAAAGGTGCTGTTATGAAAGCTATCTGTGCTGGTTTTGAAG
genomic: TGATGTTACCATATTGCCTACTCTAGTTGTCAATAATAGACAGTATCGAGgtttgtactg ... tttgttccagGAAAATTGGAGAAAGGTGCTGTTATGAAAGCTATCTGTGCTGGTTTTGAAG
EST: gi|208319496|gb|GE113405.1|GE113405
EST:     TGATGTTACCATATTGCCTACTCTAGTTGTCAATAATAGACAGTATCGAG                         GAAAATTGGAGAAA
genomic: TGATGTTACCATATTGCCTACTCTAGTTGTCAATAATAGACAGTATCGAGgtttgtactg ... tttgttccagGAAAATTGGAGAAA
EST: gi|208326073|gb|GE119727.1|GE119727
EST:     TGATGTTACCATATTGCCTACTCTAGTTGTCAATAATAGACAGTATCGAG                         GAAAATTGGAGAAAGGTGCTGTTATGAAAGCTATCTGTGCTGGTTTTGAAG
genomic: TGATGTTACCATATTGCCTACTCTAGTTGTCAATAATAGACAGTATCGAGgtttgtactg ... tttgttccagGAAAATTGGAGAAAGGTGCTGTTATGAAAGCTATCTGTGCTGGTTTTGAAG
EST: gi|151407733|gb|EV277548.1|EV277548
EST:     TGATGTTACCATATTGCCTACTCTAGTTGTCAATAATAGACAGTATCGAG                         GAAAATTGGAGAAAGGTGCTGTTATGAAAGCTATCTGTGCTGGTTTTGAAG
genomic: TGATGTTACCATATTGCCTACTCTAGTTGTCAATAATAGACAGTATCGAGgtttgtactg ... tttgttccagGAAAATTGGAGAAAGGTGCTGTTATGAAAGCTATCTGTGCTGGTTTTGAAG
EST: gi|298171587|gb|HO021179.1|HO021179
EST:     TGATGTTACCATATTGCCTACTCTAGTTGTCAATAATAGGCAGTATCGAG                         GAAAATTGGAGAAAGGTGCTGTTATGAAAGCTATCTGTGCTGGTTTTGAAG
genomic: TGATGTTACCATATTGCCTACTCTAGTTGTCAATAATAGACAGTATCGAGgtttgtactg ... tttgttccagGAAAATTGGAGAAAGGTGCTGTTATGAAAGCTATCTGTGCTGGTTTTGAAG
EST: gi|193451412|gb|FK417916.1|FK417916
EST:     TGATGTTACCATATTGCCTACTCTAGTTGTCAATAATAGACAGTATCGAG                         GAAAATTGGAGAAAGGTGCTGTTATGAAAGCTATCTGTGCTGGTTTTGAAG
genomic: TGATGTTACCATATTGCCTACTCTAGTTGTCAATAATAGACAGTATCGAGgtttgtactg ... tttgttccagGAAAATTGGAGAAAGGTGCTGTTATGAAAGCTATCTGTGCTGGTTTTGAAG
EST: gi|192304755|gb|FG994991.1|FG994991
EST:     TGATGTTACCATATTGCCTACTCTAGTTGTCAATAATAGACAGTATCGAG                         GAAAATTGGAGAAAGGTGCTGTTATGAAAGCTATCTGTGCTGGTTTTGAAG
genomic: TGATGTTACCATATTGCCTACTCTAGTTGTCAATAATAGACAGTATCGAGgtttgtactg ... tttgttccagGAAAATTGGAGAAAGGTGCTGTTATGAAAGCTATCTGTGCTGGTTTTGAAG
EST: gi|193667036|gb|FK608882.1|FK608882
EST:     TGATGTTACCATATTGCCTACTCTAGTTGTCAATAATAGACAGTATCGAG                         GAAAATTGGAGAAAGGTGCTGTCGTGAAAGCTATCTGTGCTGGTTTTGAAG
genomic: TGATGTTACCATATTGCCTACTCTAGTTGTCAATAATAGACAGTATCGAGgtttgtactg ... tttgttccagGAAAATTGGAGAAAGGTGCTGTTATGAAAGCTATCTGTGCTGGTTTTGAAG
EST: gi|254331964|gb|GR843707.1|GR843707
EST:     TGATGTTACCATATTGCCTACTCTAGTTGTCAATAATAGACAGTATCGAG                         GAAAATTGGAGAAAGGTGCTGTTATGAAAGCTATCTGTGCTGGTTTTGAAG
genomic: TGATGTTACCATATTGCCTACTCTAGTTGTCAATAATAGACAGTATCGAGgtttgtactg ... tttgttccagGAAAATTGGAGAAAGGTGCTGTTATGAAAGCTATCTGTGCTGGTTTTGAAG
EST: gi|193696330|gb|FK640178.1|FK640178
EST:     TGATGTTACCATATTGCCTACTCTAGTTGTCAATAATAGACAGTATCGAG                         GAAAATTGGAGAAAGGTGCTGTTATGAAAGCTATCTGTGCTGGTTTTGAAG
genomic: TGATGTTACCATATTGCCTACTCTAGTTGTCAATAATAGACAGTATCGAGgtttgtactg ... tttgttccagGAAAATTGGAGAAAGGTGCTGTTATGAAAGCTATCTGTGCTGGTTTTGAAG