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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATGTATCGAGGAGGTAGGGGAACCGGAAGGCCAAAAACTGCTCCACCAGATCTGCCTTCTTTGCTCTTGGATGCTCGAATATGCTATCTGGGTATGCCGgtaagcatcaccccaatgactcatgtttttcccctgactagcttctgtatataggtatctacctgctatcttttatcccaattttgatgttccttattaagtctttatgatttgtacag

Basic information

species Glycine max
transcript GLYMA20G26950.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G26950.1 (Glycine max), 5'ss of exon 4
lower sequence: AT1G49970.1 (Arabidopsis thaliana), 5'ss of exon 3
TATGTATCGA-GGAGGTAGGGGAACCGGAAGGCCAAAAACTGCTCCACCAGATCTGCCTTCTTTGCTCTTGGATGCTCGAATATGCTATCTGGGTATGCCGgtaagcatcaccccaatgactcat--gtttttcccctgactagcttctgtatataggtatctacctgctatcttttatcccaattttgatgttccttattaagtctttatgatttgtacag
 | ||   |  || ||  | ||| | | ||| |||| ||||||||| |||||| ||||||||||||| ||||||||||| |||||||| || || ||||| |||||    |||   |||  ||      || |  |   ||    |||| |      || | | |   ||   |         || | |      | | ||   || || | | ||| |   
-AGGTGGAGGTGGCGGCGGAGGATCTGAAAGACCAAGAACTGCTCCTCCAGATTTGCCTTCTTTGCTATTGGATGCTCGCATATGCTACCTTGGCATGCCAgtaag----accttcatgtgtcgataacttgttactaaacccatttctttgctactgtgtttgctctctgcttagctattggatctag----ctcattttgcttcatttttacttgcag--

upper sequence: GLYMA20G26950.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv03s0091g00700.t01 (Vitis vinifera), 5'ss of exon 3
TATGTATCGAGGAGGTAGGGGAACCGGAAGGCCAAAAACTGCTCCACCAGATCTGCCTTCTTTGCTCTTGGATGCTCGAATATGCTATCTGGGTATGCCGgtaagca--tcaccccaatgactcatgtttttcccc------tgactag---cttctgtatataggtatctacctgctatcttttatcccaattttgatgttccttattaagtctttatgatttgtacag
 |||||||| ||||| || ||| | ||||| || | ||||||||| || ||| |||| ||||||||||| |||||||| || ||||||||||| ||||| |||||    || | |   |   | ||  | | | |       || ||||   ||||  ||| |   |  | |  | |  ||  ||     | ||    || |  || ||    | |     ||| | |||
CATGTATCGTGGAGGCAGAGGATCTGGAAGACCCAGAACTGCTCCTCCTGATTTGCCATCTTTGCTCTTAGATGCTCGGATTTGCTATCTGGGCATGCCAgtaagtcattctctctctttgtttatcctgtgctctgggtattggctaggaacttccctatttctcttgccatattccttcgatttgattagttgccttgatattttttttcccctctaattttctgcag