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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCCATTTGTCAAATAATGATGATGAACATGATCCATGGACTGCATGGGCATACAAGCCTCGCACCATCACATTGTTACTTATTGGCGCTTGCTTTCTTATgtgagtgtttagctggataaattaacgtcaacaagtggtgtatttttatctacttggaaatttgttcttcaataaaattaattttctctcccccctacttaattttttcatatcattgtatataccag

Basic information

species Glycine max
transcript GLYMA20G25830.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G25830.2 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G110834_T01 (Zea mays), 5'ss of exon 2
CCCATTTGTCAAATAATGATGATGAACATGATCCATGGACTGCATGGGCATACAAGCCTCGCACCATCACATTGTTACTTATTGGCGCTTGCTTTCTTATgtgagtgtttagctggataaattaacgtcaacaagtggtgtatttttatctacttggaaat-ttgttcttcaataaaattaattttct-ctcccccctacttaattttttcatatcattgtatataccag
     |    | || ||  || |||    ||||||||||| |||||||||||||||||||| || ||| |  | || || || ||  | |||||| | |||||||    |||     | |  |           ||||   ||||| ||  ||  | | ||  | || |  ||||| | |||    || ||     | ||| | |||||                     
TAAGATCACTAGATCATTTTGGTGATGTAGATCCATGGACGGCATGGGCATACAAGCCTCGAACGATCTCGCTCTTGCTGATGGGAACATGCTTTTTAATgtgagctcatagtctttttatct-----------gtggaacatttt-atagacaggaacatgcttttttgaaataataataagggcctgcttggaaccactcagtttttaag------------------

upper sequence: GLYMA20G25830.2 (Glycine max), 5'ss of exon 4
lower sequence: AT1G15110.1 (Arabidopsis thaliana), 5'ss of exon 2
CCCATTTGTCA-AATAATGATGATGAACATGATCCATGGACTGCATGGGCATACAAGCCTCGCACCATCACATTGTTACTTATTGGCGCTTGCTTTCTTATgtgagtgtttagctggataaattaacgtcaacaagtggtgtatttttatctacttggaaatttgttcttcaataaaattaattttctctccc-ccctacttaattttttcatatcattgtatataccag
     | ||    ||  |||   ||| | ||||||||||||||||||||| |||||||||||||| ||| |  |  | |||||||||||||| ||||| ||||||||  | |  |           | ||  |   |  |    ||||| ||   ||        ||  ||   |   | |||||  | |       ||||||                           
-GTGGTGGTGGTGATGTTGAGACTGATCTTGATCCATGGACTGCATGGGCTTACAAGCCTCGCACTATCTCTCTTCTCCTTATTGGCGCTTGTTTTCTCATgtgagtcatcattt-----------cttc--ctgcttcttcccttttacctctctg----cccatttctcgtaatcctcaatttggttttgaattttacttag--------------------------

upper sequence: GLYMA20G25830.2 (Glycine max), 5'ss of exon 4
lower sequence: Vv01s0011g04370.t01 (Vitis vinifera), 5'ss of exon 2
CCCATTTGTCAAATAATGATGATGAACATGATCCATGGACTGCATGGGCATACAAGCCTCGCACCATCACATTGTTACTTATTGGCGCTTGCTTTCTTATgtgagtgtttagctggataaattaacgtcaacaagtggtgtatttttatctacttggaaatttgttcttcaataaaattaattttctctcccccctacttaattttttcatatcattgtatataccag
 |   || |||| |  || |||||||||||||||||||||||||||||||||||| ||||| |||||  |||| ||||||||||| || || |||||||||||||||         |||| |      || |   |    |   |   | ||  ||        || || ||||  || |||||    | |    ||   |                           
GCAGCTTATCAAGTGTTGGTGATGAACATGATCCATGGACTGCATGGGCATACAAACCTCGTACCATTTCATTATTACTTATTGGTGCATGTTTTCTTATgtgagtgacctatcaaataagtagtttacatcttattaaattgatggctatatctgttgtcagattattgaataggat-aatttatggtgctaattatgaa---------------------------