1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GGTGCTATCATGGCTGTTGGCGCATCAAAGCCTACTGTTCTGGCTGATAAAGATGGATTCTTCAGCGTGAAGAATAAAATGCTGgtgagttacttgtcatagcttataactacttttatttgtttgtgcacatatgctttagaacaatggacagaattcaggtgaatacagactcttttttgtg...
species | Glycine max |
transcript | GLYMA20G24830.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CTGTTCTGGCTGATAAAGATGGATTCTTCAGCGTGAAGAATAAAATGCTG GTGAGTGTAACAGCTGATCATCGAATTATTTATGGGGCTGACTTGGCCGCTEST: gi|208183505|gb|GD987411.1|GD987411
genomic: CTGTTCTGGCTGATAAAGATGGATTCTTCAGCGTGAAGAATAAAATGCTGgtgagttact ... cctttttcagGTGAATGTAACAGCTGATCATCGAATTATTTATGGGGCTGACTTGGCCGCT
EST: GAAGAATAAAATGCTG GTGAATGTAACAGCTGATCATCGAATTATTTATGGGGCTGACTTGGCCGCTEST: gi|9985549|gb|BE659657.1|BE659657
genomic: GAAGAATAAAATGCTGgtgagttact ... cctttttcagGTGAATGTAACAGCTGATCATCGAATTATTTATGGGGCTGACTTGGCCGCT
EST: CTGTTCTGGCTGATAAAGATGGATTCTTCAGCGTGAAGAATAAAATGCTG GTGAATGTAACAGCTGATCATCGAATTATTTATGGGGCTGACTTGGCCGCTEST: gi|21257189|gb|BQ454077.1|BQ454077
genomic: CTGTTCTGGCTGATAAAGATGGATTCTTCAGCGTGAAGAATAAAATGCTGgtgagttact ... cctttttcagGTGAATGTAACAGCTGATCATCGAATTATTTATGGGGCTGACTTGGCCGCT
EST: CTGTTCTGGCTGATAAAGATGGATTCTTCAGCGTGAAGAATAAAATGCTG GTGAATGTAACAGCTGATCATCGAATTATTTATGGGGCTGACTTGGCCGCT
genomic: CTGTTCTGGCTGATAAAGATGGATTCTTCAGCGTGAAGAATAAAATGCTGgtgagttact ... cctttttcagGTGAATGTAACAGCTGATCATCGAATTATTTATGGGGCTGACTTGGCCGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTGCTATCATGGCTGTTGGCGCATCAAAGCCTACTGTTCTGGCTGATAAAGATGGATTCTTCAGCGTGAAGAATAAAATGCTGgtgagttacttgtcatagcttataactacttttatttgtttgtgcacatatgctttagaacaatggacagaattcaggtgaatacagactcttttttgtg
- - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG