Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATTCTTGATGGAGTGGATGACCTCATGCAACTAAGTTATTTAAATGAGCCATCGGTTTTATTCAACCTGCAATATAGATACAATCATAATATGATCTATgtaagtctttatatcgcttaagtttttctcttcaaatttgtttcctaatcataacatctttaattacataactgtattcaattcag

Basic information

species Glycine max
transcript GLYMA20G23660.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G23660.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G139583_T02 (Zea mays), 5'ss of exon 3
TATTCTTGATGGAGTGGATGACCTCATGCAACTAAGTTATTTAAATGAGCCATCGGTTTTATTCAACCTGCAATATAGATACAATCATAATATGATCTATgtaagtctttatatcgcttaagtttttctcttcaaatttgtttcctaatcataacatctttaattacataactgtattcaattcag
 ||||||||||||||||||||||| ||||| ||||||||| ||| ||| ||||| ||  | | ||| ||||| || ||||||   ||  | ||||| ||||||||   | || |    |   | ||| |  |  ||||   ||  |     ||  ||   || |||    ||||||          
AATTCTTGATGGAGTGGATGACCTTATGCAGCTAAGTTATCTAAGTGAACCATCAGTGCTGTACAATCTGCAGTACAGATACTCCCAGGACATGATTTATgtaagaagtgatgtgaactttttattttttatggaattcaattaatggctttattattgatatttatcgtactgtag---------

upper sequence: GLYMA20G23660.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G113202_T01 (Zea mays), 5'ss of exon 3
TATTCTTGATGGAGTGGATGACCTCATGCAACTAAGTTATTTAAATGAGCCATCGGTTTTATTCAACCTGCAATATAGATACAATCATAATATGATCTATgtaagtctttatatcgcttaagtttttctcttcaaatttgtttcctaatcataacatctttaattacataactgtattcaattcag
 |||||||||||||||||||| || ||||| ||||||||| ||| ||| ||||| ||  | | ||| ||||| || ||||||    |  ||||||| ||||||||   | || |      |   ||| | ||  | ||   ||  |     ||  ||   || |||    ||||||          
AATTCTTGATGGAGTGGATGATCTTATGCAGCTAAGTTATCTAAGTGAACCATCAGTACTGTACAATCTGCAGTACAGATACTCCAAGGATATGATTTATgtaagaagtgatgt------aaactttttttttgagttcaattaatggctttattattgatatttatcgtactgtag---------

upper sequence: GLYMA20G23660.1 (Glycine max), 5'ss of exon 4
lower sequence: AT1G50360.1 (Arabidopsis thaliana), 5'ss of exon 4
TATTCTTGATGGAGTGGATGACCTCATGCAACTAAGTTATTTAAATGAGCCATCGGTTTTATTCAACCTGCAATATAGATACAATCATAATATGATCTATgtaagtc-tttatatcgcttaagtttttctcttcaaatttgttt----cctaatcataacatctttaattacataactgtattcaattcag-----------------------------------
||||||||||||||| || || |||||||||||||||||||||||||||||| | || || | ||||||  | ||||| ||||| ||  | ||||| |||||||| | ||| |     |  ||||| | | |||  |  ||||      ||  ||     |   |  ||   | ||   ||| |  || |                                    
TATTCTTGATGGAGTAGACGATCTCATGCAACTAAGTTATTTAAATGAGCCAGCAGTGTTGTACAACCTTGAGTATAGGTACAACCAGGACATGATATATgtaagccgtttgtgctaatacagtttattttttctgacatgttgacaatctcttctctgaactatatatagtaaaatgttataccctttactatttgcttttctgaattttcctttatggtgctag

upper sequence: GLYMA20G23660.1 (Glycine max), 5'ss of exon 4
lower sequence: AT3G19960.2 (Arabidopsis thaliana), 5'ss of exon 4
TATTCTTGATGGAGTGGATGACCTCATGCAACTAAGTTATTTAAATGAGCCATCGGTTTTATTCAACCTGCAATATAGATACAATCATAATATGATCTATgtaagtctttatatcgcttaagtttttctcttcaaatttgtttcctaatcataacatctttaattacataactgtattcaattcag-------------------------------------------
|||||||||||||||||| || || ||||| || ||||| |||||||||||||| || || | ||||||  | ||||| ||||| ||  | ||||| ||||||||||||| | | | | |  ||||| | | |  ||  |  |  || || |     |  | | |   | ||| |||    | |||                                           
TATTCTTGATGGAGTGGACGATCTTATGCAGCTTAGTTACTTAAATGAGCCATCAGTGTTGTACAACCTCAACTATAGGTACAACCAAGACATGATATATgtaagtcttt-tgttg-tgatatttttttttgctcatcaggataatagtcttt---cccctgaatctgttactatatatgttccagcatctactcttgcttggctaacctttttcctttatggtgctag

upper sequence: GLYMA20G23660.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv10s0071g00210.t01 (Vitis vinifera), 5'ss of exon 3
TATTCTTGATGGAGTGGATGACCTCATGCAACTAAGTTATTTAAATGAGCCATCGGTTTTATTCAACCTGCAATATAGATACAATCATAATATGATCTATgtaagtctttatatcgcttaagtttttctcttcaaatttgtttcctaatcataacatctttaattacataactgtattcaattcag--------------------
||| ||||| || || |||||||| |||||||| ||||| ||||||||||||||||| || | ||| || ||| |||||||||||||  ||||||| ||||||||| ||||| |  |||       | | ||  |||||| |||  ||   |  ||  ||   | |  |   | |      |                        
TATACTTGACGGTGTAGATGACCTTATGCAACTTAGTTACTTAAATGAGCCATCGGTGTTGTACAATCTTCAACATAGATACAATCAAGATATGATTTATgtaagtgtttatttttcttctaaacatattttttaatttgcttctgaaatgtgccagtttctctaatgtttttattggtggtgtgcctcttatatgcttgttgtag