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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGCATCCTGATTGATAATGTGGAGAAGCAAACTGGTAGTCTCTACTCTGATTGGGATCTTCTCCCTCCAAAGACAATCAAAGATCCCGAGGCTAAAAAAgtacttctcttcccagagtcgtagtttaattttcagattagctttggtttcagtattgataatttctattcttaatatattcacag

Basic information

species Glycine max
transcript GLYMA20G23080.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G23080.2 (Glycine max), 5'ss of exon 4
lower sequence: AT1G09210.1 (Arabidopsis thaliana), 5'ss of exon 4
CAGCATCCTGATTGATAATGTGGAGAAGCAAACTGGTAGTCTCTACTCTGATTGGGATCTTCTCCCTCCAAAGACAATCAAAGATCCCGAGGCTAAAAAAgtacttctcttcccagagtcg--tagtttaattttcagattagct--ttggtttcagtattga--taattt----ctattcttaatatat-tcacag----------------------------------------------------------------------------
|||||| || || || ||||| ||||| ||||||||||| || |||||||| |||||||||||||| || ||||  ||||| || |||   || || || ||| |    |||  |    |    ||  |||  |    |  | |   ||    ||| | |||    ||  |    |||  |  ||   ||  || ||                                                                            
CAGCATTCTCATCGACAATGTTGAGAAACAAACTGGTAGCCTTTACTCTGACTGGGATCTTCTCCCACCCAAGAAGATCAAGGACCCCAGCGCCAAGAAGgtattctatttcttatgaacaaccaggctaaactgagaaccaaccacttatactcaattttggagcaaactagaactaaccacaaaccataccaaagctctctgatgaacttggttgattatacctgagataccatccatcatacaaattgatccttttatttatttgtacag

upper sequence: GLYMA20G23080.2 (Glycine max), 5'ss of exon 4
lower sequence: Vv07s0005g01390.t01 (Vitis vinifera), 5'ss of exon 4
CAGCATCCTGATTGATAATGTGGAGAAGCAAACTGGTAGTCTCTACTCTGATTGGGATCTTCTCCCTCCAAAGACAATCAAAGATCCCGAGGCTAAAAAAgtacttctcttcccagagtcgtagtttaattttcagattagctttggtttcagtat-tgataatttctattcttaatata---ttcacag----------------------------------------------------
||| ||||| || || ||||||||||| ||| |||||||||| || |||||||||||  ||||||||||||||   ||||| ||| || | || ||||||||| ||          |||  |  |||| | ||| | |||| ||  ||| || ||| || ||| || |     |||   |   ||||                                                       
CAGTATCCTTATCGACAATGTGGAGAAACAATCTGGTAGTCTTTATTCTGATTGGGACATTCTCCCTCCAAAGCAGATCAAGGATGCCAAAGCCAAAAAAgtaattactcataagaagttatttttta-tcttctgtttagatt--gttgcattatgtgttaaattttggcagtaacccagagttcaagagtgtgttagattttctttcctttttgacaagaagaatgtgttggatttacag

upper sequence: GLYMA20G23080.2 (Glycine max), 5'ss of exon 4
lower sequence: Vv14s0060g01290.t01 (Vitis vinifera), 5'ss of exon 4
CAGCATCCTGATTGATAATGTGGAGAAGCAAACTGGTAGTCTCTACTCTGATTGGGATCTTCTCCCTCCAAAGACAATCAAAGATCCCGAGGCTAAAAAAgtacttctcttcccagagtcgtagtttaattttcagattagctttggt--ttcagtattgataatt-tctattcttaatatattcacag
||||||||| ||||| ||||| ||||| || ||||||||||| ||||||||||||||| |||||||||||||||  ||||| ||||| ||||| || |||||| ||   |   ||       |||  | ||| |   ||| |||   |  ||  | ||  | |||  |    | |||  ||  | ||||
CAGCATCCTAATTGACAATGTTGAGAAACAGACTGGTAGTCTGTACTCTGATTGGGATATTCTCCCTCCAAAGAAGATCAAGGATCCTGAGGCCAAGAAAgtaattacttatgcatcaattcagtccagttt-ctttttaacttaactaattttggatgaacaataatgcgattttataatgataacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254332429|gb|GR843906.1|GR843906
EST:     ATTGGGATCTTCTCCCTCCAAAGACA-TCAAAGATCCCGAGGCTAAAAAA                         CCAGAAGATTGG-ATGACAAAGAATTTATTCCTGATCCCGAG
genomic: ATTGGGATCTTCTCCCTCCAAAGACAATCAAAGATCCCGAGGCTAAAAAAgtacttctct ... atattcacagCCAGAAGATTGGGATGACAAAGAATTTATTCCTGATCCCGAG
EST: gi|4289620|gb|AI437497.1|AI437497
EST:     ATTGGGATCTTCTCCCTCCAAAGACAATCAAAGATCCCGAGGCTAAAAAA                         CCAGAAGATTGGGATGACAAAGAATTTATTCCTGATCCCGAGGATAAGAAA
genomic: ATTGGGATCTTCTCCCTCCAAAGACAATCAAAGATCCCGAGGCTAAAAAAgtacttctct ... atattcacagCCAGAAGATTGGGATGACAAAGAATTTATTCCTGATCCCGAGGATAAGAAA
EST: gi|298193745|gb|HO040393.1|HO040393
EST:     ATTGGGATCTTCTCCCTCCAAAGACAATCAAAGATCCCGAGGCTAAAAAA                         CCAGAAGATTGGGATGACAAAGAATTTATTCCTGATCCCGAGGATAAGAAG
genomic: ATTGGGATCTTCTCCCTCCAAAGACAATCAAAGATCCCGAGGCTAAAAAAgtacttctct ... atattcacagCCAGAAGATTGGGATGACAAAGAATTTATTCCTGATCCCGAGGATAAGAAA
EST: gi|13790097|gb|BG652688.1|BG652688
EST:     ATTGGGATCTTCTCCCTCCAAAGACAATCAAAGATCCCGAGGCTAAAAAA                         CCAGAAGATTGGGATGACAAAGAATTTATTCCTGATCCCGAGGATAAGAAA
genomic: ATTGGGATCTTCTCCCTCCAAAGACAATCAAAGATCCCGAGGCTAAAAAAgtacttctct ... atattcacagCCAGAAGATTGGGATGACAAAGAATTTATTCCTGATCCCGAGGATAAGAAA
EST: gi|7147510|gb|AW509432.1|AW509432
EST:     ATTGGGATCTTCTCCCTCCAAAGACAATCAAAGATCCCGAGGCTAAAAAA                         CCAGAAGATTGGGATGACAAAGAATTTATTCCTGATCCCGAGGATAAGAAA
genomic: ATTGGGATCTTCTCCCTCCAAAGACAATCAAAGATCCCGAGGCTAAAAAAgtacttctct ... atattcacagCCAGAAGATTGGGATGACAAAGAATTTATTCCTGATCCCGAGGATAAGAAA
EST: gi|22521717|gb|BU080528.1|BU080528
EST:     ATTGGGATCTTTTCCCTCCAAAGACAATCAAAGATCCCGAGGCTAAAAAA                         CCAGAAGATTGGGATGACAAAGAATTTATTCCTGATCCCGAGGATAAGAAA
genomic: ATTGGGATCTTCTCCCTCCAAAGACAATCAAAGATCCCGAGGCTAAAAAAgtacttctct ... atattcacagCCAGAAGATTGGGATGACAAAGAATTTATTCCTGATCCCGAGGATAAGAAA
EST: gi|207836291|gb|GD806960.1|GD806960
EST:     ATTGGGATCTTCTCCCTCCAAAGACAATCAAAGATCCCGAGGCTAAAAA-                         CCAGAAGATTGGGATGACAAAGAAATTTATTCCTGATC
genomic: ATTGGGATCTTCTCCCTCCAAAGACAATCAAAGATCCCGAGGCTAAAAAAgtacttctct ... atattcacagCCAGAAGATTGGGATGACAAAGAA-TTTATTCCTGATC
EST: gi|213615216|gb|DB965024.1|DB965024
EST:     ATTGGGATCTTCTCCCTCCAAAGACAATCAAAGATCCCGAGGCTAAAAAA                         CCAGAAGATTGGGATGACAAAGAATTTATTCCTGATCCCGAGGATAAGAAA
genomic: ATTGGGATCTTCTCCCTCCAAAGACAATCAAAGATCCCGAGGCTAAAAAAgtacttctct ... atattcacagCCAGAAGATTGGGATGACAAAGAATTTATTCCTGATCCCGAGGATAAGAAA
EST: gi|208339532|gb|GE138594.1|GE138594
EST:     ATTGGGATCTTCTCCCTCCAAAGACAATCAAAGATCCCGAGGCTAAAAAA                         CCAGAAGATTGGGATGACAAAGAAATTTAATTCCTGACTCCCG
genomic: ATTGGGATCTTCTCCCTCCAAAGACAATCAAAGATCCCGAGGCTAAAAAAgtacttctct ... atattcacagCCAGAAGATTGGGATGACAAAGAA-TTTA-TTCCTGA-TCCCG
EST: gi|193404716|gb|FK369601.1|FK369601
EST:     ATTGGGATCTTCTCCCTCCAAAGACAATCAAAGATCCCGAGGCTAAAAAA                         CCAGAAGATTGGGATGACAAAGAATTTATTCCTGATCCCGAGGATAAGAAA
genomic: ATTGGGATCTTCTCCCTCCAAAGACAATCAAAGATCCCGAGGCTAAAAAAgtacttctct ... atattcacagCCAGAAGATTGGGATGACAAAGAATTTATTCCTGATCCCGAGGATAAGAAA
EST: gi|208330230|gb|GE132203.1|GE132203
EST:     ATTGGGATCTTCTCCCTCCAAAGACAATCAAAGATCCCGAGGCTAAAAAA                         CCAGAAGATTGGGATGACAAAGAATTTAATTCCTGATCCCG
genomic: ATTGGGATCTTCTCCCTCCAAAGACAATCAAAGATCCCGAGGCTAAAAAAgtacttctct ... atattcacagCCAGAAGATTGGGATGACAAAGAATTTA-TTCCTGATCCCG
EST: gi|24136456|gb|BU926966.1|BU926966
EST:     ATTGGGATCTTCTCCCTCCAAAGACAATCAAAGATCCCGAGGCTAAAAAA                         CCAGAAGATTGGGATGACAAAGAATTTATTCCTGATCCCGAGGATAAGAAA
genomic: ATTGGGATCTTCTCCCTCCAAAGACAATCAAAGATCCCGAGGCTAAAAAAgtacttctct ... atattcacagCCAGAAGATTGGGATGACAAAGAATTTATTCCTGATCCCGAGGATAAGAAA
EST: gi|193448512|gb|FK412467.1|FK412467
EST:     ATTGGGATCTTCTCCCTCCAAAGACAATCAAAGATCCCGAGGCTAAAAAA                         CCAGAAGATTGGGATGACAAAGAATTTATTCCTGATCCCGAGGATAAGAAA
genomic: ATTGGGATCTTCTCCCTCCAAAGACAATCAAAGATCCCGAGGCTAAAAAAgtacttctct ... atattcacagCCAGAAGATTGGGATGACAAAGAATTTATTCCTGATCCCGAGGATAAGAAA
EST: gi|208188492|gb|GD985178.1|GD985178
EST:     ATTGGGATCTTCTCCCTCCAAAGACAATCAAAGATCCCGAGGCTAAAAAA                         CCNGAAGATTGGGATGACAAAGAATTT
genomic: ATTGGGATCTTCTCCCTCCAAAGACAATCAAAGATCCCGAGGCTAAAAAAgtacttctct ... atattcacagCCAGAAGATTGGGATGACAAAGAATTT
EST: gi|6718756|gb|AW306403.1|AW306403
EST:     ATTGGGATCTTCTCCCTCCAAAGACAATCAAAGATCCCGAGGCTAAAAAA                         CCAGAAGATTGNGATGACAAAGAATNTATTCCTGATCCCGAGGATAAGAAA
genomic: ATTGGGATCTTCTCCCTCCAAAGACAATCAAAGATCCCGAGGCTAAAAAAgtacttctct ... atattcacagCCAGAAGATTGGGATGACAAAGAATTTATTCCTGATCCCGAGGATAAGAAA
EST: gi|208203090|gb|GD997522.1|GD997522
EST:     ATTGGGATCTTCTCCCTCCAAAGACAATCAAAGATCCCGAGGCTAAAAAA                         CCAGAAGATTGGGATGACAAAGAATTTATTCCTGATCCCG
genomic: ATTGGGATCTTCTCCCTCCAAAGACAATCAAAGATCCCGAGGCTAAAAAAgtacttctct ... atattcacagCCAGAAGATTGGGATGACAAAGAATTTATTCCTGATCCCG
EST: gi|18692767|gb|BM521615.1|BM521615
EST:     ATTGGGATCTTCTCCCTCCAAAGACAATCAAAGATCCCGAGGCTAAAAAA                         CCAGAAGATTGGGATGACAAAGAATTTATTCCTGATCCCGAGGATAAGAAA
genomic: ATTGGGATCTTCTCCCTCCAAAGACAATCAAAGATCCCGAGGCTAAAAAAgtacttctct ... atattcacagCCAGAAGATTGGGATGACAAAGAATTTATTCCTGATCCCGAGGATAAGAAA
EST: gi|26045988|gb|CA783372.1|CA783372
EST:     ATTGGGATCTTCTCCCTCTTTTTACAATCAAAGATCCCGAGGCTAAAAAA                         CCAGAAGATTGGGATGACAAAGAATTTATTCCTGATCCCGAGGATAAGAAA
genomic: ATTGGGATCTTCTCCCTCCAAAGACAATCAAAGATCCCGAGGCTAAAAAAgtacttctct ... atattcacagCCAGAAGATTGGGATGACAAAGAATTTATTCCTGATCCCGAGGATAAGAAA
EST: gi|207755558|gb|GD730419.1|GD730419
EST:     ATTGGGATCTTCTCCCTCCAAAGACAATCAAAGATCCCGAGGCTAAAAAA                         CCAGAAGATTGGGATGACAAAGAATTTATTCCTGATCCCGAGGATAA
genomic: ATTGGGATCTTCTCCCTCCAAAGACAATCAAAGATCCCGAGGCTAAAAAAgtacttctct ... atattcacagCCAGAAGATTGGGATGACAAAGAATTTATTCCTGATCCCGAGGATAA
EST: gi|22524331|gb|BU083142.1|BU083142
EST:     ATTGGGATCTTCTCCCTCCAAAGACAATCATTTATCCCGAGGCTAAAAAA                         CCAGAAGATTGGGATGACAAAGAATTTATTCCTGATCCCGAGGATAAGAAA
genomic: ATTGGGATCTTCTCCCTCCAAAGACAATCAAAGATCCCGAGGCTAAAAAAgtacttctct ... atattcacagCCAGAAGATTGGGATGACAAAGAATTTATTCCTGATCCCGAGGATAAGAAA
EST: gi|14990999|gb|BI316672.1|BI316672
EST:     ATTGGGATCTTCTCCCTCCAAAGACAATCAAAGATCCCGAGGCTAAAAAA                         CCAGAAGATTGGGATGACAAAGAATTTATTCCTGATCCCGAGGATAAGAAA
genomic: ATTGGGATCTTCTCCCTCCAAAGACAATCAAAGATCCCGAGGCTAAAAAAgtacttctct ... atattcacagCCAGAAGATTGGGATGACAAAGAATTTATTCCTGATCCCGAGGATAAGAAA