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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTATAAGCTACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTTGTCTTCCAGgtaaaattatgtatccagttgactaaatgagatgcatttctttagccttttcaacacaagtgacataattattgccaattctgaggttgggtgtgattgtag

Basic information

species Glycine max
transcript GLYMA20G22600.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G22600.3 (Glycine max), 5'ss of exon 4
lower sequence: Vv14s0060g00600.t01 (Vitis vinifera), 5'ss of exon 4
ACTATAAGCTACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTTGTCTTCCAGgtaaaattatgtatccagttgactaaatgagatgcatttctttagccttttcaacacaagtgacataattattgccaatt-ctgaggttgggtgtgattgtag
|| ||||| |||||||| ||||| ||||| ||||||||||||||||||||||| || || |||| | |   ||||        |  | || |||| | |  ||  | |   ||| | ||      |   |  || || || |||   ||  |||   |   ||
ACAATAAGTTACATGGCTGAGCGCGTTGTTGGGCATGGATCATTTGGAGTTGTTTTTCAAgtaagaatccatatc--------tttacgatatgcctgttattttcttccacaa-agaacaatttttcatgctgtcattttctggttttctgtgccttatcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213589828|gb|DB969621.1|DB969621
EST:     ACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTTGTCTTCCAG                         GCTAAGTGCTTGGAAACCGGTGAAACTGTGGCTATCAAAAAGGTTCTTCAA
genomic: ACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTTGTCTTCCAGgtaaaattat ... gtgattgtagGCTAAGTGCTTGGAAACCGGTGAAACTGTGGCTATCAAAAAGGTTCTTCAA
EST: gi|26058927|gb|CA801841.1|CA801841
EST:     ACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTTGTCTTCCAG                         GCTAAGTGCTTGGAAACCGGTGAAACTGTGGCTATCAAAAAGGTTCTTCAA
genomic: ACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTTGTCTTCCAGgtaaaattat ... gtgattgtagGCTAAGTGCTTGGAAACCGGTGAAACTGTGGCTATCAAAAAGGTTCTTCAA
EST: gi|209720625|gb|BW654452.1|BW654452
EST:     ACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTTGTCTTCCAG                         GCTAAGTGCTTGGAAACCGGTGAAACTGTGGCTATCAAAAAGGTTCTTCAA
genomic: ACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTTGTCTTCCAGgtaaaattat ... gtgattgtagGCTAAGTGCTTGGAAACCGGTGAAACTGTGGCTATCAAAAAGGTTCTTCAA
EST: gi|208250486|gb|GE046921.1|GE046921
EST:     GTTGTAGGGCATGGATCATTTGGAGTTGTCTTCCAG                         GCTAAGTGCTCGGAAACCGGTGAAACTGTGGCTATCAAAAAGGTTCTTCAA
genomic: GTTGTAGGGCATGGATCATTTGGAGTTGTCTTCCAGgtaaaattat ... gtgattgtagGCTAAGTGCTTGGAAACCGGTGAAACTGTGGCTATCAAAAAGGTTCTTCAA
EST: gi|19052551|gb|BM731218.1|BM731218
EST:     ACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTTGTCTTCCAG                         GCTAAGTGCTTGGAAACCGGTGAAACTGTGGCTATCAAAAAGGTTCTTCAA
genomic: ACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTTGTCTTCCAGgtaaaattat ... gtgattgtagGCTAAGTGCTTGGAAACCGGTGAAACTGTGGCTATCAAAAAGGTTCTTCAA
EST: gi|209699787|gb|BW655800.1|BW655800
EST:     ACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTTGTCTCCCAG                         GCTAAGTGCTTGGAAACCGGTGAAACTGTGGCTATCAAAAAGGTTCTTCAA
genomic: ACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTTGTCTTCCAGgtaaaattat ... gtgattgtagGCTAAGTGCTTGGAAACCGGTGAAACTGTGGCTATCAAAAAGGTTCTTCAA
EST: gi|18039891|gb|BM308185.1|BM308185
EST:     ACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTTGTCTTCCAG                         GCTAAGTGCTTGGAAACCGGTGAAACTGTGGCTATCAAAAAGGTTCTTCAA
genomic: ACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTTGTCTTCCAGgtaaaattat ... gtgattgtagGCTAAGTGCTTGGAAACCGGTGAAACTGTGGCTATCAAAAAGGTTCTTCAA
EST: gi|192296530|gb|FG991636.1|FG991636
EST:     ACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTTGTCTTCCAG                         GCTAAGTGCTTGGAAACCGGTGAAACTGTGGCTATCAAAAAGGTTCTTCAA
genomic: ACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTTGTCTTCCAGgtaaaattat ... gtgattgtagGCTAAGTGCTTGGAAACCGGTGAAACTGTGGCTATCAAAAAGGTTCTTCAA
EST: gi|22522553|gb|BU081364.1|BU081364
EST:     ACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTTGTCTTCCAG                         GCTAAGTGCTTGGAAACCGGTGAAACTGTGGCTATCAAAAAGGTTCTTCAA
genomic: ACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTTGTCTTCCAGgtaaaattat ... gtgattgtagGCTAAGTGCTTGGAAACCGGTGAAACTGTGGCTATCAAAAAGGTTCTTCAA
EST: gi|208111645|gb|GD911911.1|GD911911
EST:     ACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTTGTCTTCCAG                         GCTAAGTGCTTGGAAACCGGTGAAACTGTGGCTATCAAAAAGGTTACTTCA
genomic: ACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTTGTCTTCCAGgtaaaattat ... gtgattgtagGCTAAGTGCTTGGAAACCGGTGAAACTGTGGCTATCAAAAAGGTT-CTTCA
EST: gi|16997007|gb|BM086379.1|BM086379
EST:     TGGATCATTTGGAGTTGTCTTCCAG                         GCTAAGTGCTTGGAAACCGGTGAAACTGTGGCTATCAAAAAGGTTCTTCAA
genomic: TGGATCATTTGGAGTTGTCTTCCAGgtaaaattat ... gtgattgtagGCTAAGTGCTTGGAAACCGGTGAAACTGTGGCTATCAAAAAGGTTCTTCAA
EST: gi|213616715|gb|DB971240.1|DB971240
EST:     ACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTTGTCTTCCAG                         GCTAAGTGCTTGGAAACCGGTGAAACTGTGGCTATCAAAAAGGTTCTTCAA
genomic: ACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTTGTCTTCCAGgtaaaattat ... gtgattgtagGCTAAGTGCTTGGAAACCGGTGAAACTGTGGCTATCAAAAAGGTTCTTCAA
EST: gi|15814184|gb|BI786459.1|BI786459
EST:     ACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTTGTCTTCCAG                         GCTAAGTGCTTGGAAACCGGTGAAACTGTGGCTATCAAAAAGGTTCTTCAA
genomic: ACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTTGTCTTCCAGgtaaaattat ... gtgattgtagGCTAAGTGCTTGGAAACCGGTGAAACTGTGGCTATCAAAAAGGTTCTTCAA
EST: gi|254333709|gb|GR848627.1|GR848627
EST:     ACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTTGTCTTCCAG                         GCTAAGTGCTTGGAAACCGGTGAAACTGTGGCTATCAAAAAGGTTCTTCAA
genomic: ACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTTGTCTTCCAGgtaaaattat ... gtgattgtagGCTAAGTGCTTGGAAACCGGTGAAACTGTGGCTATCAAAAAGGTTCTTCAA
EST: gi|9205156|gb|BE331380.1|BE331380
EST:     CATTTGGAGTTGTCTTCCAG                         GCTAAGTGCTTGGAAACCGGTGAAACTGTGGCTATCAAAAAGGTTCTTCAA
genomic: CATTTGGAGTTGTCTTCCAGgtaaaattat ... gtgattgtagGCTAAGTGCTTGGAAACCGGTGAAACTGTGGCTATCAAAAAGGTTCTTCAA
EST: gi|254327042|gb|GR836651.1|GR836651
EST:     ACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTTGTCTTCCAG                         GCTAAGTGCTTGGAAACCGGTGAAACTGTGGCTATCAAAAAGGTTCTTCAA
genomic: ACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTTGTCTTCCAGgtaaaattat ... gtgattgtagGCTAAGTGCTTGGAAACCGGTGAAACTGTGGCTATCAAAAAGGTTCTTCAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ACTATAAGCTACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTTGTCTTCCAGgtaaaattatgtatccagttgactaaatgagatgcatttctttagccttttcaacacaagtgacataattattgccaattctgaggttgggtgtgattgtag

- - - - - - - - - - - - - - - -  CATGGA
- - - - - - - - - - - - - - - - - - - - -  TTGGAG