Sequence
atgc intronic sequence ATGC exonic sequenceTTGATGACGACTTTAATGCCAAGGTTTCTGATTTTGGCCTGGCCAAGCTTCTTGGTTCTGGGAAGAGTCATGTTGCAACACGAGTTATGGGAACCTTTGGgtctgtatttttgtgctcttccctatggagctatgtcctttttctgccctcaatggaggagctttgatgagttcaatccctatatttattcttttctcgtgctccataaaattgacag
Basic information
species | Glycine max |
transcript | GLYMA20G22550.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA20G22550.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv14s0060g00460.t01 (Vitis vinifera), 5'ss of exon 5
TTGATGACGACTTTAATGCCAAGGTTTCTGATTTTGGCCTGGCCAAGCTTCTTGGTTCTGGGAAGAGTCATGTTGCAACACGAGTTATGGGAACCTTTGGgtctgtattttt----gtgctcttccctatggagctatgtcctttttctgccctcaatggaggagctttgatgagttcaatccctatatttattcttttctcgtgctccataaaattgacag--------------------------------------------------------------------
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TTGATGATGATTTCAATGCCAAGGTTTCTGATTTCGGCCTGGCCAAGTTGTTGGGTGCTGGGAAAAGTCATATCACAACTCGAGTTATGGGAACCTTTGGgtaagtattatttctagtgcatgatattacctagatgtctcaatgttttgttttcttattctagatattagtttattaagttattat-tttttacactgattgtggagggttacgtaatcatatctgatttctcatattcacttctcttaagctcctcaacctcctccctatctcttctaaatgttacag
upper sequence: GLYMA20G22550.1 (Glycine max), 5'ss of exon 4
lower sequence: PP1S358_6V6.1 (Physcomitrella patens), 5'ss of exon 4
TTGATGACGACTTTAATGCCAAGGTTTCTGATTTTGGCCTGGCCAAGCTTCTTGGTTCTGGGAAGAGTCATGTTGCAACACGAGTTATGGGAACCTTTGGgtctgtatttttgtgctcttccctatggagctatgtcctt--tttctgccctcaatggaggagctttgatgagttcaatccctatatttattcttttctcgtgct--ccataaaattgacag
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TGGATGCGCAATGGAATGCTAAGGTGTCTGATTTTGGACTTGCCAAGCTTCTTGGCTCTGGCAAGAGCCATGTCACCACGCGTGTCATGGGAACTTTCGGgtaagcgtaaa-gtatgatttattgcctcgttgtaacaataattgcagctagcaacggtgacaagtatttgtttgtctttcatggttttctccttgagtcgttacgatggttgtttttgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|10845906|gb|BF071211.1|BF071211EST: CTTGGTTCTGGGAAGAGTCATGTTGCAACACGAGTTATGGGAACCTTTGG ATATGTGGCTCCTGAATATGCAAATACTGGTCTTCTAAATGAAAAAAGTGA
genomic: CTTGGTTCTGGGAAGAGTCATGTTGCAACACGAGTTATGGGAACCTTTGGgtctgtattt ... aaattgacagATATGTGGCTCCTGAATATGCAAATACTGGTCTTCTAAATGAAAAAAGTGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTGATGACGACTTTAATGCCAAGGTTTCTGATTTTGGCCTGGCCAAGCTTCTTGGTTCTGGGAAGAGTCATGTTGCAACACGAGTTATGGGAACCTTTGGgtctgtatttttgtgctcttccctatggagctatgtcctttttctgccctcaatggaggagctttgatgagttcaatccctatatttattcttttctcgtgctccataaaattgacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA