1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
ATGAGCATTGGAAGGAAGTGGAAGGAAATCATAGATGTTAACGACAAGATAACATACAACTTTCATgtaaacttatgctcataagttttgattgactagcgtaatgcataaatatctatgattcttacatctctatgtgttgcag
species | Glycine max |
transcript | GLYMA20G21510.2 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AGTGGAAGGAAATCATAGATGTTAACGACAAGATAACATACAACTTTCAT GATGATTCTAGAACCAAAGGAGCATCAAAGGGTCGATACACCGTATAAACAEST: gi|192325421|gb|FK018377.1|FK018377
genomic: AGTGGAAGGAAATCATAGATGTTAACGACAAGATAACATACAACTTTCATgtaaacttat ... tgtgttgcagGATGATTCTAGAACCAAAGGAGCATCAAAGGGTCGATACACCGTATAAACA
EST: AGTGGAAGGAAATCATAGATGTTAACGACAAGATAACATACAACTTTCAT GATGATTCTAGAACCAAAGGAGCATCAAAGGGTCGATACACCGTATAAACAEST: gi|209724913|gb|BW669602.1|BW669602
genomic: AGTGGAAGGAAATCATAGATGTTAACGACAAGATAACATACAACTTTCATgtaaacttat ... tgtgttgcagGATGATTCTAGAACCAAAGGAGCATCAAAGGGTCGATACACCGTATAAACA
EST: AGTGGAAGGAAATCATAGATGTTAACGACAAGATAACATACAACTTTCAT GATGATTCTAGAACCAAAGGAGCATCAAAGGGTCGATACACCGTATAAACAEST: gi|254320358|gb|GR831166.1|GR831166
genomic: AGTGGAAGGAAATCATAGATGTTAACGACAAGATAACATACAACTTTCATgtaaacttat ... tgtgttgcagGATGATTCTAGAACCAAAGGAGCATCAAAGGGTCGATACACCGTATAAACA
EST: AGTGGAAGGAAATCATAGATGTTAACGACA-GATA-CATACA-CTTTCAT GATGATTCTAGAEST: gi|192310625|gb|FG999592.1|FG999592
genomic: AGTGGAAGGAAATCATAGATGTTAACGACAAGATAACATACAACTTTCATgtaaacttat ... tgtgttgcagGATGATTCTAGA
EST: AGTGGAAGGAAATCATAGATGTTAACGACAAGATAACATACAACTTTCAT GATGATTCTAGAACCAAAGGAGCATCAAAGGGTCGATACACCGTATAAACAEST: gi|120532041|gb|EH260174.1|EH260174
genomic: AGTGGAAGGAAATCATAGATGTTAACGACAAGATAACATACAACTTTCATgtaaacttat ... tgtgttgcagGATGATTCTAGAACCAAAGGAGCATCAAAGGGTCGATACACCGTATAAACA
EST: AGTGGAAGGAAATCATAGATGTTAACGACAAGATAACATACAACTTTCAT GATGATTCTAGAACCAAAGGAGCATCAAAGGGTCGATACACCGTATAAACAEST: gi|7692491|gb|AW760596.1|AW760596
genomic: AGTGGAAGGAAATCATAGATGTTAACGACAAGATAACATACAACTTTCATgtaaacttat ... tgtgttgcagGATGATTCTAGAACCAAAGGAGCATCAAAGGGTCGATACACCGTATAAACA
EST: AGTGGAAGGAAATCATAGATGTTAACGACAAGATAACATACAACTTTCAT GATGATTCTAGAACCAAAGGAGCATCAAAGGGTCGATACACCGTATAAACAEST: gi|120533215|gb|EH261348.1|EH261348
genomic: AGTGGAAGGAAATCATAGATGTTAACGACAAGATAACATACAACTTTCATgtaaacttat ... tgtgttgcagGATGATTCTAGAACCAAAGGAGCATCAAAGGGTCGATACACCGTATAAACA
EST: AGTGGAAGGAAATCATAGATGTTAACGACAAGATAACATACAACTTTCAT GATGATTCTAGAACCAAAGGAGCATCAAAGGGTCGATACACCGTATAAACAEST: gi|23733803|gb|BU765115.1|BU765115
genomic: AGTGGAAGGAAATCATAGATGTTAACGACAAGATAACATACAACTTTCATgtaaacttat ... tgtgttgcagGATGATTCTAGAACCAAAGGAGCATCAAAGGGTCGATACACCGTATAAACA
EST: AGTGGAAGGAAATCATAGATGTTAACGACAAGATAACATACAACTTTCAT GATGATTCTAGAACCCAAGGAGCATCAAAGGGT
genomic: AGTGGAAGGAAATCATAGATGTTAACGACAAGATAACATACAACTTTCATgtaaacttat ... tgtgttgcagGATGATTCTAGAACCAAAGGAGCATCAAAGGGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGAGCATTGGAAGGAAGTGGAAGGAAATCATAGATGTTAACGACAAGATAACATACAACTTTCATgtaaacttatgctcataagttttgattgactagcgtaatgcataaatatctatgattcttacatctctatgtgttgcag
- - - - - - - - AGTGGA
- - - - - - - - - TGGAAG
- - - - - - - - - - AAGGAA