1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
CGGTAGGGATGACATTTCAAAAAGGCTTGAGGAAATATATAAGAGGCTTGAACTCATTGATGCTGATTCTGCCGAGGCACGAGCAGCATCAATACTAGCGgtgagttcattgttgattcataccataatttgttagtcacttgttggaaggtcttattctcttattagccacttggatcttgttgaattataggtttgta...
species | Glycine max |
transcript | GLYMA20G16170.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AACTCATTGATGCTGATTCTGCCGAGGCACGAGCAGCATCAATACTAGCG GGTTTGAGTTTCACTCCTGAGATGCAEST: gi|208045147|gb|GD843237.1|GD843237
genomic: AACTCATTGATGCTGATTCTGCCGAGGCACGAGCAGCATCAATACTAGCGgtgagttcat ... gcattttcagGGTTTGAGTTTCACTCCTGAGATGCA
EST: AACACATTGATGCTGATTCGGCCGAGGCACGAGCAGCATCAATACTAGCA GGTTTGAGTTTCACTCCTGAGATGCAGAAGAAGGCAACAAAAACATTTTCTEST: gi|37995248|gb|CF806837.1|CF806837
genomic: AACTCATTGATGCTGATTCTGCCGAGGCACGAGCAGCATCAATACTAGCGgtgagttcat ... gcattttcagGGTTTGAGTTTCACTCCTGAGATGCAGAAAAAGGCAACAAAAACATTTTCT
EST: AACTCATTGATGCTGATTCTGCCGAGGCACGAGCAGCATCAATACTAGCG GGTTTGAGTTTCACTCCTGAGATGCAGAAAAAGGCAACAAAAACATTTTCT
genomic: AACTCATTGATGCTGATTCTGCCGAGGCACGAGCAGCATCAATACTAGCGgtgagttcat ... gcattttcagGGTTTGAGTTTCACTCCTGAGATGCAGAAAAAGGCAACAAAAACATTTTCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGGTAGGGATGACATTTCAAAAAGGCTTGAGGAAATATATAAGAGGCTTGAACTCATTGATGCTGATTCTGCCGAGGCACGAGCAGCATCAATACTAGCGgtgagttcattgttgattcataccataatttgttagtcacttgttggaaggtcttattctcttattagccacttggatcttgttgaattataggtttgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG