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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATAAGAAATAATTTAACTCAGTTGTATGCCAAAGACATCACTCCTGATGATAAGCAGGAACTTGACGAGGCTCTACAGAGGGAGgtgaatatcaaaagggctttgtttaatatcattttttctcctttttttgctagtgttctttcttgtgttcataacaaaagccatatattaaatcggaagt...

Basic information

species Glycine max
transcript GLYMA20G09810.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G09810.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os08g27840.1 (Oryza sativa), 5'ss of exon 3
GATAAGAAATAATTTAACTCAGTTGTATGCCAAAGACATCACTCCTGATGATAAGCAGGAACTTGACGAGGCTCTACAGAGGGAGgtgaa--tatcaaa--agggctttgtttaatatcattttttctcctttttttgctagtgt---tctttcttgtgttcataacaaaagccatatattaaatcggaagt-------------------------------------------------------------------------------------
|||||| |||  |||   |||  | ||  | || || ||||| || |||||||| ||||| ||||| |||||||| ||||||||||| |    |||||   |     |   | | |   | | ||  |  |||||||   | |||   |   | ||   ||  | | | ||   ||| ||||  |      |                                                                                     
GATAAGGAATTGTTTGGTTCAACTATACTCAAAGGATATCACACCAGATGATAAACAGGAGCTTGATGAGGCTCTCCAGAGGGAGgtaagataatcaagttaatcactgactcatttatagtcttgattttttttttcaaattgtatgtgccttttcgattatttatagaaattataaattactttcagcatgatgctcaacatgccagattttgtgctccaactaaatttattaatgcattaataaggtgaatcagaacatgttcttatttttcag

upper sequence: GLYMA20G09810.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G473001_T01 (Zea mays), 5'ss of exon 3
GATAAGAAATAATTTAACTCAGTTGTATGCCAAAGACATCACTCCTGATGATAAGCAGGAACTTGACGAGGCTCTACAGAGGGAGgtgaatat--caaaagggctttgtttaatatcattttttctcctttt--tttgctagtgttctttcttgtgttcataacaaaagccatata---ttaaatcggaagt
|||| | ||   |||   |||  | ||  | ||||| |||||||| |||||||||||||||||||| |||||||| || || |||||   | |  |||      ||| ||   ||  ||| |||     ||             ||  |||||   ||| || |  ||  | | |    ||   |   ||| 
GATACGCAACTGTTTGGTTCAACTCTACTCAAAAGATATCACTCCGGATGATAAGCAGGAACTTGATGAGGCTCTGCAAAGAGAGgtacttctttcaatctaattttattacctaaaattctttgaagcttgagaccaaagagattaattcttaatttcttacctgaatacctctctctttctttttcaag-

upper sequence: GLYMA20G09810.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv19s0014g01390.t01 (Vitis vinifera), 5'ss of exon 3
GATAAGAAATAATTTAACTCAGTTGTATGCCAAAGACATCACTCCTGATGATAAGCAGGAACTTGACGAGGCTCTACAGAGGGAGgtgaatatcaaaagggctttgtttaatat---cattttttctcctttttttgctagtgttctttcttgtgttcataacaaaagccatatattaaatcggaagt
|||  | ||   |||| | ||||| |||||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||| |||||    | | | | | | || ||   ||| || |    |   ||  ||  |       | ||   ||||  || |     | | || || | |    
GATCCGGAACTGTTTAGCCCAGTTATATGCCAAAGACATTACTCCTGATGATAAGCAGGAACTTGATGAGGCTCTACAGAGAGAGgtaaatatttgtatgacatggctcaacatagacatgttcttggttcagttctctgttacatgagcctgcagtcatg-cagatcatttctcttgaaactgcc--

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193518461|gb|FK476704.1|FK476704
EST:     ACATCACTCCTGATGATAAGCAGGAACTTGACGAGGCTCTACAGAGGGAG                         ATCCAAGCTGCATTCCGTACTGATGAAATCAGGAGGA
genomic: ACATCACTCCTGATGATAAGCAGGAACTTGACGAGGCTCTACAGAGGGAGgtgaatatca ... gttcatgtagATCCAAGCTGCATTCCGTACTGATGAAATCAGGAGGA
EST: gi|151396752|gb|EV266625.1|EV266625
EST:     ACATCACTCCTGATGATAAGCAGGAACTTGACGAGGCTCTACAGAGGGAG                         ATCCAAGCTGCATTCCGTACTGATGAAATCAGGAGGACCCCTCCAACCCCA
genomic: ACATCACTCCTGATGATAAGCAGGAACTTGACGAGGCTCTACAGAGGGAGgtgaatatca ... gttcatgtagATCCAAGCTGCATTCCGTACTGATGAAATCAGGAGGACCCCTCCAACCCCA