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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCGTATTTTGTACTTTGGAAACCGCCAGCTCCCCCTGTTGAAGAAACTCAGCTTAAAACATGGCCTTTGAATTTTCTGGAATCAAAAGTAACTGCAACGgtaatgctcatctaaacctcatcttgcaaagttgctgcagacaaatcatagtaatctaaataatgattccatggttaagtgattttgcttaggctaatgc...

Basic information

species Glycine max
transcript GLYMA20G07300.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G07300.1 (Glycine max), 5'ss of exon 4
lower sequence: AT2G04360.1 (Arabidopsis thaliana), 5'ss of exon 3
TCCGTATTTTGTACTTTGGAAACCGCCAGCTCCCCCTGTTGAAGAAACTCAGCTTAAAACATGGCCTTTGAATTTTCTGGAATCAAAAGTAACTGCAACGgtaa-----tgctcatctaaacctcatcttgcaaagttgctgcagacaaatcatagtaatctaaataatgattccatggttaagtgattttg---cttaggctaatgc---------------
 || ||||||| ||| ||||| || ||  |||| ||||||  ||| ||| |||| | |  ||||||||||||| ||||||||||||||||||||||   |||||     |     ||| |  ||||   |    |  |  ||       ||||  | | |   ||     |    || ||    ||  |||    ||| || |  ||                
ACCTTATTTTGCACTGTGGAATCCTCCTTCTCCTCCTGTTTCAGAGACTGAGCTGAGACAATGGCCTTTGAATGTTCTGGAATCAAAAGTAACTGCTGGGgtaagagattatctctctcactctcactcttttgaaatcttgatttgttatcactggacttacaagttaaagaaaattgtctcttgccttttggtctttggttgttgttggattatgaatcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22523478|gb|BU082289.1|BU082289
EST:     AGCTTAAAACATGGCCTTTGAATTTTCTGGAATCAAAAGTAACTGCAACG                         ATATCACTTGCTGCAGGGGTAGCCATCATAACTTATGCTGGTCTAGCTGGA
genomic: AGCTTAAAACATGGCCTTTGAATTTTCTGGAATCAAAAGTAACTGCAACGgtaatgctca ... tgcacatcagATATCACTTGCTGCAGGGGTAGCCATCATAACTTATGCTGGTCTAGCTGGA
EST: gi|4396535|gb|AI495532.1|AI495532
EST:     AAAACATGGCCTTTGAATTTTCTGGAATCAAAAGTAACTGCAACG                         ATATCACTTGCTGCAGGGGTAGCCATCATAACTTATGCTGGTCTAGCTGGA
genomic: AAAACATGGCCTTTGAATTTTCTGGAATCAAAAGTAACTGCAACGgtaatgctca ... tgcacatcagATATCACTTGCTGCAGGGGTAGCCATCATAACTTATGCTGGTCTAGCTGGA
EST: gi|21887522|gb|BQ740735.1|BQ740735
EST:     AGCTTAAAACATGGCCTTTGAATTTTCTGGAATCAAAAGTAACTGCAACG                         ATATCACTTGCTGCAGGGGTAGCCATCATAACTTATGCTGGTCTAGCTGGA
genomic: AGCTTAAAACATGGCCTTTGAATTTTCTGGAATCAAAAGTAACTGCAACGgtaatgctca ... tgcacatcagATATCACTTGCTGCAGGGGTAGCCATCATAACTTATGCTGGTCTAGCTGGA