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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGATATAATGGACAGAGCTACTGATGCCCGAAATTTGTTACTAGGAAAAGTTATTCCTCTCCGACTTGGTTATGTAGGTGTTGTAAACCGTAGTCAGGAGgtaatcacacttcacactgtacataagggtatttttcaaatgcaaataaatataaacatgtactttgctcaattggcattaaggttaatatgcaatttttaatttattgtttcatcatgttag

Basic information

species Glycine max
transcript GLYMA20G06670.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G06670.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os04g31190.1 (Oryza sativa), 5'ss of exon 4
GGATATAATGGACAGAGCTACTGATGCCCGAAATTTGTTACTAGGAAAAGTTATTCCTCTCCGACTTGGTTATGTAGGTGTTGTAAACCGTAGTCAGGAGgtaatcacacttcacactgtacataagggtatttttcaaatgcaaataaatataaacatgtactt--tgctcaattggcattaaggttaatatgcaatttttaatttattgtttcatcatgttag
||| || |||||||| |  |||||||| || || || ||||| ||||| || || || |||   ||||||||||||||||||||||| ||||| || ||||||    |   | | ||  |||  | |    ||  | | ||     | | ||| | | || | ||  |  || | |  |||  ||  | | |||  ||    ||| | || |             
GGACATCATGGACAGGGGCACTGATGCTCGTAACTTTTTACTGGGAAATGTGATCCCCCTCAAGCTTGGTTATGTAGGTGTTGTAAATCGTAGCCAAGAGgtaccttc---taagacaatac-catgaaccttcattagat-----tgactatcatcttgaatttcttcttcgagttccat--agtctcacatgatatgac-aatgtttttt-------------

upper sequence: GLYMA20G06670.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv03s0038g00970.t01 (Vitis vinifera), 5'ss of exon 4
GGATATAATGGACAGAGCTACTGATGCCCGAAATTTGTTACTAGGAAAAGTTATTCCTCTCCGACTTGGTTATGTAGGTGTTGTAAACCGTAGTCAGGAGgtaatcacact-tcacactgtacataagggtatttttcaaatgcaaataaatataaacatgtactttgctcaattggcattaaggttaatatgcaatttttaatttattgtttcatcatgttag
||| || |||||||||| ||| |||||||| ||||| || || |||||||| ||||| || |||||||||||  |||||||||| || |||||||| |||||||||      |      |||   || | || ||||| | |    ||| |  |    || |  || | |           |||| |||  |  | ||  |                       
GGACATTATGGACAGAGGTACCGATGCCCGCAATTTATTGCTTGGAAAAGTGATTCCCCTTCGACTTGGTTACATAGGTGTTGTGAATCGTAGTCAAGAGgtaatcttggaattttgtggtagtgaaagataattttctattt---atacaccttttgatatgattggtttggggcagccaaagggtaaggttgagttccttg---------------------