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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCACGCTTCTTCTTCCAACAACTTATATCAGGGGTTAGCTACTGTCATGCAATGgtacataagttcggcatctttagtctttacttttacaataggtataatgagttgctgacttcaatgtttctatttatcttatttaataaag

Basic information

species Glycine max
transcript GLYMA20G01240.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G01240.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G081915_T02 (Zea mays), 5'ss of exon 3
GCACGCTTCTTCTTCCAACAACTTATATCAGGGGTTAGCTACTGTCATGCAATGgtacataagttcggcatctttagtctttacttttacaataggtataatgagttgct---gacttcaatgtttctatttatcttatttaataaag-------
|| || ||||| ||||||||||| ||||||||||| |||||||| ||| | ||||||| ||  ||     ||||| |  |  | | |||| |  |  |   ||   ||||   ||||    |||||  | |    |   ||  |           
GCGCGTTTCTTTTTCCAACAACTCATATCAGGGGTCAGCTACTGCCATTCCATGgtacgtatattgtttttcttt-gcttccaatgttactactgtcaatctgtactgctctggactggtctgtttaaaatcgcttctgtttttctgcctacctg

upper sequence: GLYMA20G01240.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G081915_T01 (Zea mays), 5'ss of exon 3
GCACGCTTCTTCTTCCAACAACTTATATCAGGGGTTAGCTACTGTCATGCAATGgtacataagttcggcatctttagtctttacttttacaataggtataatgagttgct---gacttcaatgtttctatttatcttatttaataaag----------------
|| || ||||| ||||||||||| ||||||||||| |||||||| ||| | ||||||| ||  ||     ||||| |  |  | | |||| |  |  |   ||   ||||   ||||    |||||  | |    |   ||  |                    
GCGCGTTTCTTTTTCCAACAACTCATATCAGGGGTCAGCTACTGCCATTCCATGgtacgtatattgtttttcttt-gcttccaatgttactactgtcaatctgtactgctctggactggtctgtttaaaatcgcttctgtttttctgcctacctgttcgtcaag

upper sequence: GLYMA20G01240.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G171435_T02 (Zea mays), 5'ss of exon 4
GCACGCTTCTTCTTCCAACAACTTATATCAGGGGTTAGCTACTGTCATGCAATGgtac--------ata-agttcggcatctttagtctttacttttacaat--aggtataatgagttgctgacttcaatgtttctatttatcttatttaataaag
|| |||| ||||||||||||||| || ||||| || |||||||| ||| ||||||||         ||| | |    ||| |||  || | | | |||   |  |   |||    |       ||    ||  | | ||  ||||||||  | |||
GCTCGCTACTTCTTCCAACAACTCATTTCAGGAGTAAGCTACTGCCATTCAATGgtattagttgttatataatggcacatttttcatcat-attgttattgtttactcataccatgcattgagctgagctgccttttttattcttattt--tcaag

upper sequence: GLYMA20G01240.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv03s0063g01080.t01 (Vitis vinifera), 5'ss of exon 4
GCACGCTTCTTCTTCCAACAACTTATATCAGGGGTTAGCTACTGTCATGCAATGgtacataagttcggcatctttagtctttac-----ttttacaataggtat------aatgagttgctgacttcaat---gtttctatttatcttatttaataaag
||||| |||||||||||||||||| ||||||| || |||||||||||||| ||||||   ||  |     | ||  | ||| ||     |||||  ||  |  |      |||||  |      || | |    ||||   || | ||  ||  | |||
GCACGTTTCTTCTTCCAACAACTTGTATCAGGAGTCAGCTACTGTCATGCGATGgtattcaaacttttagttttctgccttaacctctgttttattatttgcctgaaaaaaatgaactaggcgattaagttggatttcatgttgtatttctttttgaag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18041406|gb|BM309700.1|BM309700
EST:     GCTTCTTCTTCCAACAACTTATATCAGGGGTTAGCTACTGTCATGCAATG                         CAAGTATGCCATCGTGACTTGAAGTTGGAGAACACATTGCTGGATGGTAGT
genomic: GCTTCTTCTTCCAACAACTTATATCAGGGGTTAGCTACTGTCATGCAATGgtacataagt ... tttaataaagCAAGTATGCCATCGTGACTTGAAGTTGGAGAACACATTGCTGGATGGTAGT