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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGATCGTTGTGGCATATATGGGTCCAACTGCCCTGAATGGATCATTGCAATGGAGgtataacactttctttgtatcaccataaattataagtacttcatttaattattaccacaaagtcttacaccttatgttaaattaattggctttgttaattattccaattggacttcacatgattcaatttttgtgttttgcag

Basic information

species Glycine max
transcript GLYMA20G01060.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G01060.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G104847_T01 (Zea mays), 5'ss of exon 4
GGAGATCGTTGTGGCATATATGGGTCCAACTGCCCTGAATGGATCATTGCAATGGAGgtataacactttctttgtatcaccataaattataagtacttcatttaattattaccacaaagtcttacaccttatgttaaattaattggctttgttaattattccaattggacttcacatgattcaatttttgtgttttgcag
|||| ||  |||||||||||||| ||||||||||| |||||| | || || ||| ||||          | || | ||||  ||  |      |  ||| ||| ||| | |      |   |   | || |        ||||    |    || |  ||  |||  ||| | ||||                       
GGAGCTCACTGTGGCATATATGGATCCAACTGCCCGGAATGGGTTATGGCCATGCAGgtga--------ccttatttcactttaggtctcgtttgtttcctttcattttga-----gaaattggaatctcac-------taatgaaatagactattctttagaatgtgacattacat-----------------------

upper sequence: GLYMA20G01060.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv03s0063g01880.t01 (Vitis vinifera), 5'ss of exon 4
GGAGATCGTTGTGGCATATATGGGTCCAACTGCCCTGAATGGATCATTGCAATGGAGgtataacactttctttgtatcaccataaattataagtacttcatttaattattaccacaaagtcttacaccttatgttaaattaattggctttgttaattattccaattggacttcacatgattcaatttttgtgttttgcag
|||||  | ||||| || ||||| ||||||||||| |||||||| ||||| |||||||||| | | |        || |  ||    | |  ||  ||||| | |  ||    | || |  |||    |  |   ||  || ||   ||| | ||||       || | |                              
GGAGACAGGTGTGGGATTTATGGATCCAACTGCCCCGAATGGATAATTGCTATGGAGgtattaaatt--------attaatattggctgt--gtgtttcatattagcatag--aaaatgaattat-tttcttaacaaggtattttcttttttgaatttgatttttttggc------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|308098208|gb|HO759949.1|HO759949
EST:     GTTGTGGCATATATGGGTCCAACTGCCCTGAATGGATCATTGCAATGGAG                         GCTTGCAATAGCTGTGCAGTGTCATATGTTCCATTATATGACACCCTTG
genomic: GTTGTGGCATATATGGGTCCAACTGCCCTGAATGGATCATTGCAATGGAGgtataacact ... tgttttgcagGCTTGCAATAGCTGTGCAGTGTCATATGTTCCATTATATGACACCCTTG
EST: gi|192317444|gb|FK011262.1|FK011262
EST:     GTTGTGGCATATATGGGTCCAACTGCCCTGAATGGATCATTGCAATGGAG                         GCTTGCAATAGCTGTGCAGTGTCATATGTTCCATTATATGACACCCTTG
genomic: GTTGTGGCATATATGGGTCCAACTGCCCTGAATGGATCATTGCAATGGAGgtataacact ... tgttttgcagGCTTGCAATAGCTGTGCAGTGTCATATGTTCCATTATATGACACCCTTG