1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
ACCAAAAAATCACACTACTGATGCTCCTGTTACTGATTCGGTTTCAGCATCTGCTTCAAGCAATGATAGCAAAAAAATTTCACGGCAGGATATAGATCTTgtaagacaatccattgtttgtaaaccattttaatcaactttgacttttcccacttgctttccgtttctcatgcttttacaggaaaatttacagaagctaatctggactaatctgtttttttcttctgttttttaatacatattcaaacaaattttgtag
species | Glycine max |
transcript | GLYMA19G44420.2 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CTGCTTCAAGCAATGATAGCNNNNNNNTTTCACGGCAGGATATAGATCTT GTACAAAATTTAATAGAAAGGTGCCTACAATTATATATGAATAAAGATGAAEST: gi|209705624|gb|BW653077.1|BW653077
genomic: CTGCTTCAAGCAATGATAGCAAAAAAATTTCACGGCAGGATATAGATCTTgtaagacaat ... aattttgtagGTACAAAATTTAATAGAAAGGTGCCTACAATTATATATGAATAAAGATGAA
EST: CTGCTTCAAGCAATGATAGCNNNNNNNTTTCACGGCAGGATATAGATCTT GTACAAAATTTAATAGAAAGGTGCCTACAATTATATATGAATAAAGATGAAEST: gi|192296878|gb|FG990239.1|FG990239
genomic: CTGCTTCAAGCAATGATAGCAAAAAAATTTCACGGCAGGATATAGATCTTgtaagacaat ... aattttgtagGTACAAAATTTAATAGAAAGGTGCCTACAATTATATATGAATAAAGATGAA
EST: CTGCTTCAAGCAATGATAGCNNNNNNNTTTCACGGCAGGATATAGATCTT GTACAAAATTTAATAGAAAGGTGCCTACAATTATATATGAATAAAGATGAA
genomic: CTGCTTCAAGCAATGATAGCAAAAAAATTTCACGGCAGGATATAGATCTTgtaagacaat ... aattttgtagGTACAAAATTTAATAGAAAGGTGCCTACAATTATATATGAATAAAGATGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACCAAAAAATCACACTACTGATGCTCCTGTTACTGATTCGGTTTCAGCATCTGCTTCAAGCAATGATAGCAAAAAAATTTCACGGCAGGATATAGATCTTgtaagacaatccattgtttgtaaaccattttaatcaactttgacttttcccacttgctttccgtttctcatgcttttacaggaaaatttacagaagctaatctggactaatctgtttttttcttctgttttttaatacatattcaaacaaattttgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA