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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGCTACTCCAAAGGGTGTGTTGAATCTAATGAAAGTTGAGGGCCTTACTATCTATCATGTAAAAAGCCACTTGCAGgtacatctgtgatttatcatcctcttaaatagcttatgggtgtatgtcaatttatttaatctaatgcttttcacattatttttaaatttcag

Basic information

species Glycine max
transcript GLYMA19G43690.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G43690.2 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G006477_T01 (Zea mays), 5'ss of exon 4
AGGCTACTCCAAAGGGTGTGTTGAATCTAATGAAAGTTGAGGGCCTTACTATCTATCATGTAAAAAGCCACTTGCAGgtacatctgtgatttatcatcctcttaaatagcttatgggtgtatgtcaatttatttaatctaatgcttttcacattatttttaaatttcag
| |||||||| ||||||||| | || || ||||||||||| ||  | ||||| |||||||| ||||||||| |||||||     ||   |||| | | ||   || |||  |    |   |    |     ||| || |  |  |||  || |  ||| |   || |||
AAGCTACTCCTAAGGGTGTGCTAAAGCTTATGAAAGTTGATGGTTTGACTATATATCATGTCAAAAGCCACCTGCAGgt----ttgctgtttagctttct---aagtagtattcttgcccaaaggaggccttttcattttcttatttgaac-tcgtttgtg--ttgcag

upper sequence: GLYMA19G43690.2 (Glycine max), 5'ss of exon 4
lower sequence: Vv14s0036g01380.t01 (Vitis vinifera), 5'ss of exon 3
AGGCTACTCCAAAGGGTGTGTTGAATCTAATGAAAGTTGAGGGCCTTACTATCTATCATGTAAAAAGCCACTTGCAGgtacatct--gtgatttatcatcctcttaaatagcttatgggtgtatgtcaattt---atttaatctaatgcttttcacattatttttaaatttcag
 ||| |||||||||||  | ||||| || ||||| ||||| || || || ||||||||||||||||||||  |||||||    ||   || |||||  |  | |||  |   ||       | | |  ||||    |||||    |     ||   ||||| | | |       
GGGCGACTCCAAAGGGAATCTTGAAGCTTATGAATGTTGAAGGTCTGACCATCTATCATGTAAAAAGCCATCTGCAGgtttgacttgatgttttatattgattttagttccttttctaagttgtctttattttctgtttaactggagatcctttttattatatctcag------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151401612|gb|EV269865.1|EV269865
EST:     TAATGAAAGTTGAGGGCCTTACTATCTATCATGTAAAAAGCCACTTGCAG                         AAGTATAGAACTGCCAGATATAAACCAGAGCCGTCAGAAG
genomic: TAATGAAAGTTGAGGGCCTTACTATCTATCATGTAAAAAGCCACTTGCAGgtacatctgt ... taaatttcagAAGTATAGAACTGCCAGATATAAACCAGAGCCGTCAGAAG
EST: gi|192303317|gb|FG997403.1|FG997403
EST:     TCTATCATGTAAAAAGCCACTTGCAG                         AAGTATAGAACTGCCAGATATAAACCAGAGCCGTCAGAAG
genomic: TCTATCATGTAAAAAGCCACTTGCAGgtacatctgt ... taaatttcagAAGTATAGAACTGCCAGATATAAACCAGAGCCGTCAGAAG
EST: gi|15337669|gb|BI498325.1|BI498325
EST:     TAATGAAAGTTGAGGGCCTTACTATCTATCATGTAAAAAGCCACTTGCAG                         AAGTATAGAACTGCCAGATATAAAC
genomic: TAATGAAAGTTGAGGGCCTTACTATCTATCATGTAAAAAGCCACTTGCAGgtacatctgt ... taaatttcagAAGTATAGAACTGCCAGATATAAAC
EST: gi|192303316|gb|FG997402.1|FG997402
EST:     TAATGAAAGTTGAGGGCCTTACTATCTATCATGTAAAAAGCCACTTGCAG                         AAGTATAGAACTGCCAGATATAAACCAGAGCCGTCAGAAG
genomic: TAATGAAAGTTGAGGGCCTTACTATCTATCATGTAAAAAGCCACTTGCAGgtacatctgt ... taaatttcagAAGTATAGAACTGCCAGATATAAACCAGAGCCGTCAGAAG
EST: gi|15200128|gb|BI424187.1|BI424187
EST:     GTAAAAAGCCACTTGCAG                         AAGTATAGAACTGCCAGATATAAACCAGAGCCGTCAGAAG
genomic: GTAAAAAGCCACTTGCAGgtacatctgt ... taaatttcagAAGTATAGAACTGCCAGATATAAACCAGAGCCGTCAGAAG