Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACGGCCTTGACACCAAGGTAGAAAAGTCAAGGAAGCAAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGTGGAGTAAAGAAGgtaattttgtagctagctataattttctttacctcttatgtgatccttgtttcattaaaattaaaacatatggcatgtattgttcgtgcag

Basic information

species Glycine max
transcript GLYMA19G43190.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G43190.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os02g13530.1 (Oryza sativa), 5'ss of exon 3
AACGGCCTTGACACCAAGGTAGAAAAGTCAAGGAAGCAAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGTGGAGTAAAGAAGgt--aattttgtagctagctataattttctttacctctta----tgtgatccttgtt--tcattaaaattaa---aacatatggcatgtattgttcgtgcag
|| ||||| | ||||||||| || |||||  | ||||| ||||||||||| ||||| ||||| |||||||| ||||| || ||||||||  |  |   || ||  |    |  |||| |   | | |    | | | ||   ||  | | || |  |||   |||   | || ||| | | |  |||||
AATGGCCTCGCCACCAAGGTTGAGAAGTCTCGCAAGCAGATGAAGGAGAGGAAGAACAGAGCAAAGAAGATCCGTGGTGTGAAGAAGgtctatatacttacctgaccgccaagttctattattataagagttataaaccgcattgctaactacatgtaactaaactgcttgcttgtgtcgattttgcag

upper sequence: GLYMA19G43190.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G029685_T01 (Zea mays), 5'ss of exon 3
AACGGCCTTGACACCAAGGTAGAAAAGTCAAGGAAGCAAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGTGGAGTAAAGAAGgtaattttgtagctagctataattttctttacctcttatgtgatccttgtttcattaaaattaaaacatatggcatgtattgttcgt-gcag
||||||||||  ||||||||||| |||||| | ||||| ||||||||  | ||||| || || ||||| || ||||| || |||||||| | |      | ||  |  | || ||      ||  | |   | |||||    || | || ||  || |    || |   ||  | ||||
AACGGCCTTGCTACCAAGGTAGAGAAGTCACGAAAGCAGATGAAGGAACGTAAGAACAGGGCGAAGAAAATCCGTGGTGTGAAGAAGgtgagt-----accagtcaggaattgcta-----ctcgtattcccattgttctggtacatttcaattatgtttgctgcacaattttttgcag

upper sequence: GLYMA19G43190.1 (Glycine max), 5'ss of exon 4
lower sequence: AT5G28060.1 (Arabidopsis thaliana), 5'ss of exon 4
AACGGCCTTGACACCAAGGTAGAAAAGTCAAGGAAGCAAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGTGGAGTAAAGAAGgtaatt----ttgtagctagctataatttt-ctttacctcttatgtgatccttgtttcattaaaattaa-aacatatggcatgtattgttcgtgcag
|| || |||||||||||| | || || |||||||| || || |||||||| ||||| || || |||||||| ||||| || ||||||||||            ||| | | || | | | ||  || || |    |   ||  |  ||    ||||  | || ||   ||| ||||  ||| ||
AATGGACTTGACACCAAGATTGAGAAATCAAGGAAACAGATCAAGGAGAGGAAGAACAGGGCGAAGAAGATCCGTGGTGTTAAGAAGgtaagagagaccaacactaaccagaaatctacatttgctattgttatgtttgtgcctgttttgtcttaacgatatttgcattgttttgtgagtgtag

upper sequence: GLYMA19G43190.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv07s0151g00900.t01 (Vitis vinifera), 5'ss of exon 4
AACGGCCTTGACACCAAGGTAGAAAAGTCAAGGAAGCAAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGTGGAGTAAAGAAGgtaattttgtagctagctataattttctttacctcttatgtgatccttgtttcattaaaattaaaacatatggcatgtattgttcgtgcag---------------------------------------------------------------------------------------------
|| ||  | || |||||||| |||||||||||||||||||||||||| || ||||| || || |||||| | || ||||| ||||||||||          |   ||  |  | || ||||  |  |||  |  | |  || ||  |  |   | |      |   || ||  || |                                                                                              
AATGGATTGGATACCAAGGTGGAAAAGTCAAGGAAGCAAATGAAGGAAAGGAAGAACAGGGCCAAGAAGGTCCGAGGAGTGAAGAAGgtaa-------agaaatcatcttccttttaaccttgttggtgtgcactctagcaatagtaccaggcctttcaatttccttttttgctgtacactgggttactattgccattcccattagccatattatttgccttcaaagatttgggaccttcacgttcattgtactactcgttactcttgcag

upper sequence: GLYMA19G43190.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv14s0030g01620.t01 (Vitis vinifera), 5'ss of exon 4
AACGGCCTTGACACCAAGGTAGAAAAGTCAAGGAAGCAAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGTGGAGTAAAGAAGgtaattttgtagctagctataattttctttacctcttatgtgatccttgtttcattaaaattaaaacatatggcatgtattgttcgtgcag
|| ||  | || |||||||| || ||||| |||||||||||||||||||| ||||||||  | |||||| | || || |||||||||||||    ||   ||  | |         ||||| || | |     ||   |||||   |       || |  ||| | ||| |       
AATGGATTGGATACCAAGGTCGAGAAGTCTAGGAAGCAAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAGgtaagaa-gtgaataaatttg--cagtggtacctttt-tctctcatttaactcattctcacctccctatttcccatttcttgctaacag--

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21888756|gb|BQ741969.1|BQ741969
EST:     AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGTGGAGTAAAGAAG                         ACCAAGGCTTCCGATGCTGCCAAGGCTGGGAAAAAGAAATAAGTTTTGAGA
genomic: AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGTGGAGTAAAGAAGgtaattttgt ... gttcgtgcagACCAAGGCTTCCGATGCTGCCAAGGCTGGGAAAAAGAAATAAGTTTTGAGA
EST: gi|7795416|gb|AW780741.1|AW780741
EST:     AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGTGGAGTAAAGAAG                         ACCAAGGCTTCCGATGCTGCCAAGGCTGGGAAAAAGAAATAAGTTTTGAGA
genomic: AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGTGGAGTAAAGAAGgtaattttgt ... gttcgtgcagACCAAGGCTTCCGATGCTGCCAAGGCTGGGAAAAAGAAATAAGTTTTGAGA
EST: gi|298195443|gb|HO039274.1|HO039274
EST:     AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGTGGAGTAAAGAAG                         ACCAAGGCTTCCGATGCTGCCAAGGCTGGGAAAAAGAAATAAGTTTTGAGA
genomic: AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGTGGAGTAAAGAAGgtaattttgt ... gttcgtgcagACCAAGGCTTCCGATGCTGCCAAGGCTGGGAAAAAGAAATAAGTTTTGAGA
EST: gi|151411432|gb|EV281243.1|EV281243
EST:     AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGTGGAGTAAAGAAG                         ACCAAGGCTTCCGATGCTGCCAAGGCTGGGAAAAAGAAATAAGTTTTGAGA
genomic: AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGTGGAGTAAAGAAGgtaattttgt ... gttcgtgcagACCAAGGCTTCCGATGCTGCCAAGGCTGGGAAAAAGAAATAAGTTTTGAGA
EST: gi|298197162|gb|HO041905.1|HO041905
EST:     AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGTGGAGTAAAGAAG                         ACCAAGGCTTCCGATGCTGCCAAGGCTGGGAAAAAGAAATAAGTTTTGAGA
genomic: AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGTGGAGTAAAGAAGgtaattttgt ... gttcgtgcagACCAAGGCTTCCGATGCTGCCAAGGCTGGGAAAAAGAAATAAGTTTTGAGA
EST: gi|16342193|gb|BI967788.1|BI967788
EST:     AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGTGGAGTAAAGAAG                         ACCAAGGCTTCCGATGCTGCCAAGGCTGGGAAAAAGAAATAAGTTTTGAGA
genomic: AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGTGGAGTAAAGAAGgtaattttgt ... gttcgtgcagACCAAGGCTTCCGATGCTGCCAAGGCTGGGAAAAAGAAATAAGTTTTGAGA
EST: gi|298188537|gb|HO035230.1|HO035230
EST:     AAATGAAGGAGAGAAAAAATAGAGCTAAGAAGATTCGTGGAGTAAAGAAG                         ACCAAGGCTTCCGATGCTGCCAAGGCTGGGAGAAAGAAATAAGTTTTGAGA
genomic: AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGTGGAGTAAAGAAGgtaattttgt ... gttcgtgcagACCAAGGCTTCCGATGCTGCCAAGGCTGGGAAAAAGAAATAAGTTTTGAGA
EST: gi|254329668|gb|GR839221.1|GR839221
EST:     AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGTGGAGTAAAGAAG                         ACCAAGGCTTCCGATGCTGCCAAGGCTGGGAAAAAGAAATAAGTTTTGAGA
genomic: AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGTGGAGTAAAGAAGgtaattttgt ... gttcgtgcagACCAAGGCTTCCGATGCTGCCAAGGCTGGGAAAAAGAAATAAGTTTTGAGA
EST: gi|192316519|gb|FK006782.1|FK006782
EST:     AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGTGGAGTAAAGAAG                         ACCAAGGCTTCCGATGCTGCCAAGGCTGGGAAAAAGAAATAAGTTTTGAGA
genomic: AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGTGGAGTAAAGAAGgtaattttgt ... gttcgtgcagACCAAGGCTTCCGATGCTGCCAAGGCTGGGAAAAAGAAATAAGTTTTGAGA
EST: gi|213589380|gb|DB961713.1|DB961713
EST:     AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGTGGAGTAAAGAAG                         ACCAAGGCTTCCGATGCTGCCAAGGCTGGGAAAAAGAAATAAGTTTTGAGA
genomic: AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGTGGAGTAAAGAAGgtaattttgt ... gttcgtgcagACCAAGGCTTCCGATGCTGCCAAGGCTGGGAAAAAGAAATAAGTTTTGAGA
EST: gi|209699846|gb|BW652512.1|BW652512
EST:     AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGTGGAGTAAAGAAG                         ACCAAGGCTTCCGATGCTGCCAAGGCTGGGAAAAAGAAATAAGTTTTGAGA
genomic: AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGTGGAGTAAAGAAGgtaattttgt ... gttcgtgcagACCAAGGCTTCCGATGCTGCCAAGGCTGGGAAAAAGAAATAAGTTTTGAGA
EST: gi|213608688|gb|DB968975.1|DB968975
EST:     AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGTGGAGTAAAGAAG                         ACCAAGGCTTCCGATGCTGCCAAGGCTGGGAAAAAGAAATAAGTTTTGAGA
genomic: AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGTGGAGTAAAGAAGgtaattttgt ... gttcgtgcagACCAAGGCTTCCGATGCTGCCAAGGCTGGGAAAAAGAAATAAGTTTTGAGA
EST: gi|214005555|gb|DB989383.1|DB989383
EST:     AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGTGGAGTAAAGAAG                         ACCAAGGCTTCCGATGCTGCCAAGGCTGGGAAAAAGAAATAAGTTTTGAGA
genomic: AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGTGGAGTAAAGAAGgtaattttgt ... gttcgtgcagACCAAGGCTTCCGATGCTGCCAAGGCTGGGAAAAAGAAATAAGTTTTGAGA
EST: gi|192321822|gb|FK013214.1|FK013214
EST:     AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGTGGAGTAAAGAAG                         ACCAAGGCTTCCGATGCTGCCAAGGCTGGGAAAAAGAAATAAGTTTTGAGA
genomic: AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGTGGAGTAAAGAAGgtaattttgt ... gttcgtgcagACCAAGGCTTCCGATGCTGCCAAGGCTGGGAAAAAGAAATAAGTTTTGAGA
EST: gi|298188446|gb|HO035139.1|HO035139
EST:     AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGTGGAGTAAAGAAG                         ACCAAGGCTTCCGATGCTGCCAAGGCTGGGAAAAAGAAATA
genomic: AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGTGGAGTAAAGAAGgtaattttgt ... gttcgtgcagACCAAGGCTTCCGATGCTGCCAAGGCTGGGAAAAAGAAATA
EST: gi|209713764|gb|BW679427.1|BW679427
EST:     AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGTGGAGTAAAGAAG                         ACCAAGGCTTCCGATGCTGCCAAGGCTGGGAAAAAGAAATAAGTTTTGAGA
genomic: AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGTGGAGTAAAGAAGgtaattttgt ... gttcgtgcagACCAAGGCTTCCGATGCTGCCAAGGCTGGGAAAAAGAAATAAGTTTTGAGA
EST: gi|42723225|gb|CK769124.1|CK769124
EST:     AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGTGGAGTAAAGAAG                         ACCAAGGCTTCCGATGCTGCCAAGGCTGGGAAAAAGAAATAAGTTTTGAGA
genomic: AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGTGGAGTAAAGAAGgtaattttgt ... gttcgtgcagACCAAGGCTTCCGATGCTGCCAAGGCTGGGAAAAAGAAATAAGTTTTGAGA
EST: gi|209713765|gb|BW679428.1|BW679428
EST:     AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGTGGAGTAAAGAAG                         ACCAAGGCTTCCGATGCTGCCAAGGCTGGGAAAAAGAAATAAGTTTTGAGA
genomic: AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGTGGAGTAAAGAAGgtaattttgt ... gttcgtgcagACCAAGGCTTCCGATGCTGCCAAGGCTGGGAAAAAGAAATAAGTTTTGAGA
EST: gi|192296602|gb|FG992348.1|FG992348
EST:     AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGTGGAGTAAAGAAG                         ACCAAGGCTTCCGATGCTGCCAAGGCTGGGAAAAAGAAATAAGTTTTGAGA
genomic: AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGTGGAGTAAAGAAGgtaattttgt ... gttcgtgcagACCAAGGCTTCCGATGCTGCCAAGGCTGGGAAAAAGAAATAAGTTTTGAGA
EST: gi|11687434|gb|BF595110.1|BF595110
EST:     AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGTGGAGTAAAGAAG                         ACCAAGGCTTCCGATGCTGCCAAG
genomic: AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGTGGAGTAAAGAAGgtaattttgt ... gttcgtgcagACCAAGGCTTCCGATGCTGCCAAG
EST: gi|209719764|gb|BW674915.1|BW674915
EST:     AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGTGGAGTAAAGAAG                         ACCAAGGCTTCCGATGCTGCCAAGGCTGGGAAAAAGAAATAAGTTTTGAGA
genomic: AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGTGGAGTAAAGAAGgtaattttgt ... gttcgtgcagACCAAGGCTTCCGATGCTGCCAAGGCTGGGAAAAAGAAATAAGTTTTGAGA
EST: gi|16997148|gb|BM086520.1|BM086520
EST:     AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGTGGAGTAAAGAAG                         ACCAAGGCTTCCGATGCTGCCAAGGCTGGGAAAAAGAAATAAGTTTTGAGA
genomic: AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGTGGAGTAAAGAAGgtaattttgt ... gttcgtgcagACCAAGGCTTCCGATGCTGCCAAGGCTGGGAAAAAGAAATAAGTTTTGAGA
EST: gi|298193142|gb|HO033576.1|HO033576
EST:     AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGTGGAGTAAAGAAG                         ACCAAGGCTTCCGATGCTGCCAAGGCTGGGAAAAAGA
genomic: AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGTGGAGTAAAGAAGgtaattttgt ... gttcgtgcagACCAAGGCTTCCGATGCTGCCAAGGCTGGGAAAAAGA
EST: gi|209699645|gb|BW652056.1|BW652056
EST:     AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGTGGAGTAAAGAAG                         ACCAAGGCTTCCGATGCTGCCAAGGCTGGGAAAAAGAAATAAGTTTTGAGA
genomic: AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGTGGAGTAAAGAAGgtaattttgt ... gttcgtgcagACCAAGGCTTCCGATGCTGCCAAGGCTGGGAAAAAGAAATAAGTTTTGAGA
EST: gi|192323416|gb|FK015302.1|FK015302
EST:     AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGTGGAGTAAAGAAG                         ACCAAGGCTTCCGATGCTGCCAAGGCTGGGAAAGAGAAATAAGTTTTGAGA
genomic: AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGTGGAGTAAAGAAGgtaattttgt ... gttcgtgcagACCAAGGCTTCCGATGCTGCCAAGGCTGGGAAAAAGAAATAAGTTTTGAGA
EST: gi|298183048|gb|HO028311.1|HO028311
EST:     AAATGAAGGAGATAAAGAATAGAGCTAAGAAGATTCGTGGAGTAAAGAAG                         ACCAAGGCTTCCGATGCTGCCAAGGCTGGGAAAAAGAAATAAGTTTTGAGA
genomic: AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGTGGAGTAAAGAAGgtaattttgt ... gttcgtgcagACCAAGGCTTCCGATGCTGCCAAGGCTGGGAAAAAGAAATAAGTTTTGAGA
EST: gi|192296601|gb|FG992347.1|FG992347
EST:     AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGTGGAGTAAAGAAG                         ACCAAGGCTTCCGATGCTGCCAAGGCTGGGAAAAAGAAATAAGTTTTGAGA
genomic: AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGTGGAGTAAAGAAGgtaattttgt ... gttcgtgcagACCAAGGCTTCCGATGCTGCCAAGGCTGGGAAAAAGAAATAAGTTTTGAGA
EST: gi|208219457|gb|GE018791.1|GE018791
EST:     AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGTGGAGTAAAGAAG                         ACCAAGGCTTCCGATGCTGCCAAGGCTGGGAAAAAGAAATAAGTTTTGAGA
genomic: AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGTGGAGTAAAGAAGgtaattttgt ... gttcgtgcagACCAAGGCTTCCGATGCTGCCAAGGCTGGGAAAAAGAAATAAGTTTTGAGA
EST: gi|298177156|gb|HO027051.1|HO027051
EST:     AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGTGGAGTAAAGAAG                         ACCAGGGCTTCCGATGCTGCCAAGGCTGGGAAAAAGAAATAAGTTTTGAGA
genomic: AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGTGGAGTAAAGAAGgtaattttgt ... gttcgtgcagACCAAGGCTTCCGATGCTGCCAAGGCTGGGAAAAAGAAATAAGTTTTGAGA
EST: gi|192326448|gb|FK015935.1|FK015935
EST:     AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGTGGAGTAAAGAAG                         ACCAAGGCTTCCGATGCTGCCAAGGCTGGGAAAAAGAAATAAGTTTTGAGA
genomic: AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGTGGAGTAAAGAAGgtaattttgt ... gttcgtgcagACCAAGGCTTCCGATGCTGCCAAGGCTGGGAAAAAGAAATAAGTTTTGAGA
EST: gi|11689424|gb|BF597100.1|BF597100
EST:     AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGTGGAGTAAAGAAG                         ACCAACGCTTCCGATGCTGCCAAG
genomic: AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGTGGAGTAAAGAAGgtaattttgt ... gttcgtgcagACCAAGGCTTCCGATGCTGCCAAG
EST: gi|214007771|gb|DB986137.1|DB986137
EST:     AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGTGGAGTAAAGAAG                         ACCAAGGCTTCCGATGCTGCCAAGGCTGGGAAAAAGAAATAAGTTTTGAGA
genomic: AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGTGGAGTAAAGAAGgtaattttgt ... gttcgtgcagACCAAGGCTTCCGATGCTGCCAAGGCTGGGAAAAAGAAATAAGTTTTGAGA
EST: gi|209714321|gb|BW665583.1|BW665583
EST:     AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGTGGAGTAAAGAAG                         ACCAAGGCTTCCGATGCTGCCAAGGCTGGGAAAAAGAAATAAGTTTTGAGA
genomic: AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGTGGAGTAAAGAAGgtaattttgt ... gttcgtgcagACCAAGGCTTCCGATGCTGCCAAGGCTGGGAAAAAGAAATAAGTTTTGAGA
EST: gi|209714320|gb|BW665582.1|BW665582
EST:     AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGTGGAGTAAAGAAG                         ACCAAGGCTTCCGATGCTGCCAAGGCTGGGAAAAAGAAATAAGTTTTGAGA
genomic: AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGTGGAGTAAAGAAGgtaattttgt ... gttcgtgcagACCAAGGCTTCCGATGCTGCCAAGGCTGGGAAAAAGAAATAAGTTTTGAGA
EST: gi|151407879|gb|EV277694.1|EV277694
EST:     AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGTGGAGTAAAGAAG                         ACCAAGGCTTCCGATGCTGCCAAGGCTGGGAAAAAGAAATAAGTTTTGAGA
genomic: AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGTGGAGTAAAGAAGgtaattttgt ... gttcgtgcagACCAAGGCTTCCGATGCTGCCAAGGCTGGGAAAAAGAAATAAGTTTTGAGA
EST: gi|298187430|gb|HO034579.1|HO034579
EST:     AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGTGGGGTAAAGAAG                         ACCAAGGCTTCCGATGCTGCCAAGGCTGGGAAAAAGAAATA
genomic: AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGTGGAGTAAAGAAGgtaattttgt ... gttcgtgcagACCAAGGCTTCCGATGCTGCCAAGGCTGGGAAAAAGAAATA
EST: gi|192326464|gb|FK017721.1|FK017721
EST:     AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGTGGAGTAAAGAAG                         ACCAAGGCTTCCGATGCTGCCAAGGCTGGGAAAAAGAAATAAGTTTTGAGA
genomic: AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGTGGAGTAAAGAAGgtaattttgt ... gttcgtgcagACCAAGGCTTCCGATGCTGCCAAGGCTGGGAAAAAGAAATAAGTTTTGAGA
EST: gi|27424572|gb|CA936092.1|CA936092
EST:     AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGTGGAGTAAAGAAG                         ACCAAGGCTTCCGATGCTGCCAAGGCTGGGAAAAAGAAATAAGTTTTGAGA
genomic: AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGTGGAGTAAAGAAGgtaattttgt ... gttcgtgcagACCAAGGCTTCCGATGCTGCCAAGGCTGGGAAAAAGAAATAAGTTTTGAGA
EST: gi|192321821|gb|FK013213.1|FK013213
EST:     AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGTGGAGTAAAGAAG                         ACCAAGGCTTCCGATGCTGCCAAGGCTGGGAAAAAGAAATAAGTTTTGAGA
genomic: AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGTGGAGTAAAGAAGgtaattttgt ... gttcgtgcagACCAAGGCTTCCGATGCTGCCAAGGCTGGGAAAAAGAAATAAGTTTTGAGA
EST: gi|12774771|gb|BG239698.1|BG239698
EST:     AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGTGGAGTAAAGAAG                         ACCAAGGCTTCCGATGCTGCCAAGGCTGGGAAAAAGAAATAAGTTTTGAGA
genomic: AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGTGGAGTAAAGAAGgtaattttgt ... gttcgtgcagACCAAGGCTTCCGATGCTGCCAAGGCTGGGAAAAAGAAATAAGTTTTGAGA
EST: gi|6719340|gb|AW306987.1|AW306987
EST:     AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGTGGAGTAAAGAAG                         ACCAAGGCTTCCGATGCTGCCAAGG
genomic: AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGTGGAGTAAAGAAGgtaattttgt ... gttcgtgcagACCAAGGCTTCCGATGCTGCCAAGG
EST: gi|254329667|gb|GR839220.1|GR839220
EST:     AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGTGGAGTAAAGAAG                         ACCAAGGCTTCCGATGCTGCCAAGGCTGGGAAAAAGAAATAAGTTTTGAGA
genomic: AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGTGGAGTAAAGAAGgtaattttgt ... gttcgtgcagACCAAGGCTTCCGATGCTGCCAAGGCTGGGAAAAAGAAATAAGTTTTGAGA
EST: gi|213596459|gb|DB962047.1|DB962047
EST:     AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGTGGAGTAAAGAAG                         ACCAAGGCTTCCGATGCTGCCAAGGC
genomic: AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGTGGAGTAAAGAAGgtaattttgt ... gttcgtgcagACCAAGGCTTCCGATGCTGCCAAGGC
EST: gi|13788328|gb|BG650920.1|BG650920
EST:     AAATGAAGGAGAGAAAGAATAGAGCTAAAAAGATCCGTGGAGTAAAGAAA                         ACCACAG-CTTCCGATGCTGCCAAG
genomic: AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGTGGAGTAAAGAAGgtaattttgt ... gttcgtgcagACCA-AGGCTTCCGATGCTGCCAAG
EST: gi|37994884|gb|CF806473.1|CF806473
EST:     AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGTGGAGTAAAGAAG                         ACCAAGGCTTCCGATGCTGCCAAGGCTGGGAAAAAGAAATAAGTTTTGAGA
genomic: AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGTGGAGTAAAGAAGgtaattttgt ... gttcgtgcagACCAAGGCTTCCGATGCTGCCAAGGCTGGGAAAAAGAAATAAGTTTTGAGA
EST: gi|15814867|gb|BI787142.1|BI787142
EST:     AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGTGGAGTAAAGAAG                         ACCAAGGCTTCCGATGCTGCCAAGGCTGGGAAAAAGAAATAAGTTTTGAGA
genomic: AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGTGGAGTAAAGAAGgtaattttgt ... gttcgtgcagACCAAGGCTTCCGATGCTGCCAAGGCTGGGAAAAAGAAATAAGTTTTGAGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AACGGCCTTGACACCAAGGTAGAAAAGTCAAGGAAGCAAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGTGGAGTAAAGAAGgtaattttgtagctagctataattttctttacctcttatgtgatccttgtttcattaaaattaaaacatatggcatgtattgttcgtgcag

- - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - -  AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG