Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTAATGATGCTGTTCTTGTTGGTGATAGCACACTTGTTTCTTGTTCTTCAGATACAACCCTTAAGgtttgttgattgcaagctgttttttgttccaatcaatccttgctcttcatcaataacacagtacttacatagttatttacacctttttaaatttgttag

Basic information

species Glycine max
transcript GLYMA19G42990.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G42990.1 (Glycine max), 5'ss of exon 4
lower sequence: AT3G05090.1 (Arabidopsis thaliana), 5'ss of exon 4
GTTAATGATGCTGTTCTTGTTGGTGATAGCACACTTGTTTCTTGTTCTTCAGATACAACCCTTAAGgtttgttgattgcaagctgttttttgttccaatcaat--ccttgctcttcatcaataacacagtacttacatagttatttacacctttttaaatttgt---tag
|| || || |||| ||| | |||||| ||||| |||||||||||||||||||| || ||  | |||||||||  |||       | |    |  |||||   |  | ||| | |   |   |||  |  || |    |   ||  | |  |||  | | |||||   |||
GTGAACGACGCTGCTCTGGCTGGTGAGAGCACTCTTGTTTCTTGTTCTTCAGACACTACGGTCAAGgtttgtgaatt-tgtttcgctagccgaaccaatattttactttgttttgtttttgtaattccatattggttt--ctaaatgcggcttaattattttgtatctag

upper sequence: GLYMA19G42990.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv14s0030g01350.t01 (Vitis vinifera), 5'ss of exon 4
GTTAATGATGCTGTTCTTGTTGGTGATAGCACACTTGTTTCTTGTTCTTCAGATACAACCCTTAAGgtttgttgattgcaagctgttttttgttccaatcaatccttgctcttcatcaataacacagtacttacatagttatttacacctttttaaatttgttag
|||||||||||||||||||  ||||| |  ||||| ||||| |||||||||||||| ||||| |||||||||  |||  || |  |  || |||    |   |  |  |   |    |||   |   |  |||   | |||||| | | | || | ||     ||
GTTAATGATGCTGTTCTTGCAGGTGACAATACACTCGTTTCCTGTTCTTCAGATACTACCCTCAAGgtttgtcaatttgaatccatcatt-gtt--ggtt--ttttaacctatggaaaatctgattatttttattgacttatttcc-cttattgagatacaccag