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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGTATCGTGTCACTGTTGTCTTTTACCATGCATTTTATCTTCCCTTTTTGTATACAACATTCCTAGCAGACTTTTTCCAGgttaatgtcgtttttttttttaactttttattattgtttaaagacaattccacgtactggcctgactattgtttttgtatttcag

Basic information

species Glycine max
transcript GLYMA19G42870.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G42870.2 (Glycine max), 5'ss of exon 4
lower sequence: Vv14s0030g00750.t01 (Vitis vinifera), 5'ss of exon 5
GTTGTATCGTGTCACTGTTGTCTTTTACCATGCATTTTATCTTCCCTTTTTGTATACAACATTCCTAGCAGACTTTTTCCAGgtta----atgtcgtttttttttttaactttttattattg-tttaaagacaattccacgtactggcctg-actattgt-ttttgtatttcag------------------------------------------
||| ||| || | ||  |  | || |||||||| |||||||||||| || | ||||  ||||| |||||||||||||||||||| |    |||||  |   ||         | | |||||  ||| ||  |  ||   |    |  | || | || | | |||| |  || |                                           
GTTATATGGTCTTACAATGATTTTCTACCATGCCTTTTATCTTCCCCTTCTATATATTACATTTCTAGCAGACTTTTTCCAGgtcatcggatgtccatcccttgcaagttcctctgttatttctttgaaatctgttttgccccattccatgtaatactctattttatgattgattagattcgctataggttatgactgggtgtgctgtgatgacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151396292|gb|EV266169.1|EV266169
EST:     CATTTTATCTTCCCTTTTTGTATACAACATTCCTAGCAGACTTTTTCCAG                         GAGGAAAATTTCCATTTGGAAAATGTGTATTATTCTGAGATGAAAGATGCG
genomic: CATTTTATCTTCCCTTTTTGTATACAACATTCCTAGCAGACTTTTTCCAGgttaatgtcg ... tgtatttcagGAGGAAAATTTCCATTTGGAAAATGTGTATTATTCTGAGATGAAAGATGCG
EST: gi|22932336|gb|BU549475.1|BU549475
EST:     CATTTTATCTTCCCTTTTTGTATACAACATTCCTAGCAGACTTTTTCCAG                         GAGGAAAATTTCCATTTGGAAAATGTGTATTATTCTGAGATGAAAGATGCG
genomic: CATTTTATCTTCCCTTTTTGTATACAACATTCCTAGCAGACTTTTTCCAGgttaatgtcg ... tgtatttcagGAGGAAAATTTCCATTTGGAAAATGTGTATTATTCTGAGATGAAAGATGCG
EST: gi|192331169|gb|FK023722.1|FK023722
EST:     CATTTTATCTTCCCTTTTTGTATACAACATTCCTAGCAGACTTTTTCCAG                         GAGGAAAATTTCCATTTGGAAAATGTGTATTATTCTGAGATGAAAGATGCG
genomic: CATTTTATCTTCCCTTTTTGTATACAACATTCCTAGCAGACTTTTTCCAGgttaatgtcg ... tgtatttcagGAGGAAAATTTCCATTTGGAAAATGTGTATTATTCTGAGATGAAAGATGCG
EST: gi|214006485|gb|DB987224.1|DB987224
EST:     ATTTTATCTTCCCTTTTTTGTATACAACATTCCTAGCAGACTTTTTCCAG                         GAGGAAAATTTCCATTTGGAAAATGTGTATTATTCTGAGATGAAAGATGCG
genomic: ATTTTATCTTCCC-TTTTTGTATACAACATTCCTAGCAGACTTTTTCCAGgttaatgtcg ... tgtatttcagGAGGAAAATTTCCATTTGGAAAATGTGTATTATTCTGAGATGAAAGATGCG
EST: gi|208052764|gb|GD853881.1|GD853881
EST:     CATTTTATCTTCCCTTTTTGTATACAACATTCCTAGCAGACTTTTTCCAG                         GAGGAAAATTTCCATTTGGAAAATGTGTATTATTCTGAGATGAAAGATGCG
genomic: CATTTTATCTTCCCTTTTTGTATACAACATTCCTAGCAGACTTTTTCCAGgttaatgtcg ... tgtatttcagGAGGAAAATTTCCATTTGGAAAATGTGTATTATTCTGAGATGAAAGATGCG
EST: gi|208171016|gb|GD969299.1|GD969299
EST:     TTTTTGTATACAACATTCCTAGCAGAC-TTTTCCAG                         GAGGAAAATTTCCATTTGGAAAATGTGTATTATTCTGAGATGAAAGATG
genomic: TTTTTGTATACAACATTCCTAGCAGACTTTTTCCAGgttaatgtcg ... tgtatttcagGAGGAAAATTTCCATTTGGAAAATGTGTATTATTCTGAGATGAAAGATG
EST: gi|208188478|gb|GD984744.1|GD984744
EST:     CATTTTATCTTCCCTTTTTGTATACAACATTCCTAGCAGACTTTTTCCAG                         GAGGAAAATTTCCATTTGGAAAATGTGTATTATTCTGAGATGAAAGATGCG
genomic: CATTTTATCTTCCCTTTTTGTATACAACATTCCTAGCAGACTTTTTCCAGgttaatgtcg ... tgtatttcagGAGGAAAATTTCCATTTGGAAAATGTGTATTATTCTGAGATGAAAGATGCG
EST: gi|192327942|gb|FK022473.1|FK022473
EST:     CATTTTATCTTCCCTTTTTGTATACAACATTCCTAGCAGACTTTTTCCAG                         GAGGAAAATTTCCATTTGGAAAATGTGTATTATTCTGAGATGAAAGATGCG
genomic: CATTTTATCTTCCCTTTTTGTATACAACATTCCTAGCAGACTTTTTCCAGgttaatgtcg ... tgtatttcagGAGGAAAATTTCCATTTGGAAAATGTGTATTATTCTGAGATGAAAGATGCG