1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
AAATTGCCTTTTACAAGTATGTTGCTATCATGTTCATTTTTAATGCGATTGCGACACTTGCTTGTGGCCTTGCTGGTACCCATGCTGCGTTTGCTTTCTGgttagattcttatataactgagaaggaaacatccgttatgagctgtttttctttggcatctttttctaaggccttctttactttttgttcacag
species | Glycine max |
transcript | GLYMA19G42870.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GCGACACTTGCTTGTGGCCTTGCTGGTACCCATGCTGCGTTTGCTTTCTG GTTGTATCGTGTCACTGTTGTCTTTTACCATGCATTTTATCTTCCCTTTTTEST: gi|51341748|gb|CO983065.1|CO983065
genomic: GCGACACTTGCTTGTGGCCTTGCTGGTACCCATGCTGCGTTTGCTTTCTGgttagattct ... ttgttcacagGTTGTATCGTGTCACTGTTGTCTTTTACCATGCATTTTATCTTCCCTTTTT
EST: GCGACACTTGCTTGTGGCCTTGCTGGTACCCATGCTGCGTTTGCTTTCTG GTTGTATCGTGTCACTGTTGTCTTTTACCATGCATTTTATCTTCCCTTTTTEST: gi|151396422|gb|EV266299.1|EV266299
genomic: GCGACACTTGCTTGTGGCCTTGCTGGTACCCATGCTGCGTTTGCTTTCTGgttagattct ... ttgttcacagGTTGTATCGTGTCACTGTTGTCTTTTACCATGCATTTTATCTTCCCTTTTT
EST: GCGACACT-GCT-GTGGC-T-GCTGGTACCCATGCTGCGTTTGCTTTCTG GTTGTATCGTGTCACTGT-GTCTTTEST: gi|192331169|gb|FK023722.1|FK023722
genomic: GCGACACTTGCTTGTGGCCTTGCTGGTACCCATGCTGCGTTTGCTTTCTGgttagattct ... ttgttcacagGTTGTATCGTGTCACTGTTGTCTTT
EST: GCGACACTTGCTTGTGGCCTTGCTGGTACCCATGCTGCGTTTACTTTCTG GTTGCATCGTGTCACTGTTGTCTTTTACCATGCATTTTATCTTCCCTTTTTEST: gi|214006485|gb|DB987224.1|DB987224
genomic: GCGACACTTGCTTGTGGCCTTGCTGGTACCCATGCTGCGTTTGCTTTCTGgttagattct ... ttgttcacagGTTGTATCGTGTCACTGTTGTCTTTTACCATGCATTTTATCTTCCCTTTTT
EST: GCGACACTTGCTTGTGGCCTTGCTGGTACCCATGCTGCGTTTGCTTTCTG GTTGTATCGTGTCACTGTTGTCTTTTACCATGCATTTTATCTTCCCTTTTTEST: gi|192298478|gb|FG988479.1|FG988479
genomic: GCGACACTTGCTTGTGGCCTTGCTGGTACCCATGCTGCGTTTGCTTTCTGgttagattct ... ttgttcacagGTTGTATCGTGTCACTGTTGTCTTTTACCATGCATTTTATCTTCCCTTTTT
EST: GCGACACTTGCTTGTGGCCTTGCTGGTACCCATGCTGCGTTTGCTTTCTG GTTGTATCGTGTCACTGTTGTCTTT-ACCATGCATTTTEST: gi|151412683|gb|EV282495.1|EV282495
genomic: GCGACACTTGCTTGTGGCCTTGCTGGTACCCATGCTGCGTTTGCTTTCTGgttagattct ... ttgttcacagGTTGTATCGTGTCACTGTTGTCTTTTACCATGCATTTT
EST: GCGACACTTGCTTGTGGCCTTGCTGGTACCCATGCTGCGTTTGCTTTCTG GTTGTATCGTGTCACTGTTGTCTTT-ACCATGCATTTTATCTTCCCTTTTTEST: gi|192327942|gb|FK022473.1|FK022473
genomic: GCGACACTTGCTTGTGGCCTTGCTGGTACCCATGCTGCGTTTGCTTTCTGgttagattct ... ttgttcacagGTTGTATCGTGTCACTGTTGTCTTTTACCATGCATTTTATCTTCCCTTTTT
EST: CCCATGCTGCGTTTGCTTTCTG GTTGTATCGTGTCACTGTTGTCTTTTACCATGCATTTTATCTTCCCTTTTTEST: gi|120492144|gb|EH220311.1|EH220311
genomic: CCCATGCTGCGTTTGCTTTCTGgttagattct ... ttgttcacagGTTGTATCGTGTCACTGTTGTCTTTTACCATGCATTTTATCTTCCCTTTTT
EST: GCGACACTTGCTTGTGGCCTTGCTGGTACCCATGCTGCGTTTGCTTTCTG GTTGTATCGTGTCACTGTTGTCTTTTACCATGCATTTTATCTTCCCTTTTTEST: gi|22932336|gb|BU549475.1|BU549475
genomic: GCGACACTTGCTTGTGGCCTTGCTGGTACCCATGCTGCGTTTGCTTTCTGgttagattct ... ttgttcacagGTTGTATCGTGTCACTGTTGTCTTTTACCATGCATTTTATCTTCCCTTTTT
EST: GCGACACTTGCTTGTGGCCTTGCTGGTACCCATGCTGCGTTTGCTTTCTG GTTGTATCGTGTCACTGTTGTCTTTTACCATGCATTTTATCTTCCCTTTTT
genomic: GCGACACTTGCTTGTGGCCTTGCTGGTACCCATGCTGCGTTTGCTTTCTGgttagattct ... ttgttcacagGTTGTATCGTGTCACTGTTGTCTTTTACCATGCATTTTATCTTCCCTTTTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAATTGCCTTTTACAAGTATGTTGCTATCATGTTCATTTTTAATGCGATTGCGACACTTGCTTGTGGCCTTGCTGGTACCCATGCTGCGTTTGCTTTCTGgttagattcttatataactgagaaggaaacatccgttatgagctgtttttctttggcatctttttctaaggccttctttactttttgttcacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC