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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACGGTCAGAGAAGAGGACACCCTAAATATTCTCCTGGAGTTTGTTCCTGGTGGATCCATATCATCACTATTGGGGAAGTTTGGGGCTTTCCCTGAGGCTgtaagttttagttaccgagccactatacttttgtaattttatatgccaaatcagtttcactaattcattcaacag

Basic information

species Glycine max
transcript GLYMA19G42340.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G42340.1 (Glycine max), 5'ss of exon 4
lower sequence: AT1G54960.1 (Arabidopsis thaliana), 5'ss of exon 4
TACGGTCAGAGAAGAGGACACCCTAAATATTCTCCTGGAGTTTGTTCCTGGTGGATCCATATCATCACTATTGGGGAAGTTTGGGGCTTTCCCTGAGGCTgtaagtt--ttagttaccgagccactatacttttgtaattttatatgccaaatcagtttcactaattcattcaacag--
|||||| || ||||| || ||  | |||||  | || || ||||||||||||||||| ||||| ||||| |||| ||| ||||| || || |||||  ||||||||   |  |||    | | | |    ||    || | |  |||  |    |   ||  |||    ||  | |   
TACGGTGAGGGAAGATGAAACTTTGAATATCTTGCTTGAATTTGTTCCTGGTGGATCTATATCTTCACTCTTGGAGAAATTTGGAGCCTTTCCTGAATCTgtaagtcgctctgttgaaaaactattgggtttcctgaaatgttgatg--atggtaacatctttaaactgtttgaaaaag

upper sequence: GLYMA19G42340.1 (Glycine max), 5'ss of exon 4
lower sequence: AT1G09000.1 (Arabidopsis thaliana), 5'ss of exon 4
TACGGTCAGAGAAGAGGACACCCTAAATATTCTCCTGGAGTTTGTTCCTGGTGGATCCATATCATCACTATTGGGGAAGTTTGGGGCTTTCCCTGAGGCTgtaagt-----tttagttaccgagccactatacttttgtaattt-tatat-gccaaatcagtttcactaattcattcaacag
||| || || ||||| || ||||| ||||| || || ||||||||||| |||||||| |||||||| || |||| ||| |||||  |||| |||||  | ||||||     ||   ||           |  || ||  ||| | |  || ||  ||   ||   |   ||| | | |    
TACAGTGAGGGAAGATGATACCCTGAATATCCTTCTCGAGTTTGTTCCCGGTGGATCGATATCATCGCTCTTGGAGAAATTTGGACCTTTTCCTGAATCAgtaagtcatgcttggatttttttttgttcaatctcttacaatgtgtgcattgcttaagtggtgagaacgattgaattag---

upper sequence: GLYMA19G42340.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv14s0128g00430.t01 (Vitis vinifera), 5'ss of exon 4
TACGGTCAGAGAAGAGGACACCCTAAATATTCTCCTGGAGTTTGTTCCTGGTGGATCCATATCATCACTATTGGGGAAGTTTGGGGCTTTCCCTGAGGCTgtaagtt-ttagttaccgagccactatactttt-----gtaattttatatgccaa-atcagtttcactaattcattcaacag
||  ||||| || ||||| ||| | |||||| |  |||| |||||||||||||||||||| |||||||| |||||||| |||||  |||||||||||||||| |||  | |   | |  |    |  || |||     || |||||| |||| || ||||  |  |||| ||   | | |||
TATAGTCAGGGAGGAGGAGACCTTGAATATTTTGTTGGAATTTGTTCCTGGTGGATCCATCTCATCACTTTTGGGGAAATTTGGATCTTTCCCTGAGGCTgtgagtgatcaccaatcttgatgttgcacattttggttgttatttta-atgctaatatca--tctactactttgctaagcag