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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTAGGCATGGAGACAGAAGGTTTTGCCATTTATGATGCAATGATGCAGTTGAAAAATGAGgtttgtttctttaaattaagaatcacttcgaatgattatttagttgcatgccttgttgactactattgatgatggttcttggtagtaacaagatgagaca...

Basic information

species Glycine max
transcript GLYMA19G42180.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G42180.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv14s0060g02160.t01 (Vitis vinifera), 5'ss of exon 4
GTAGGCATGGAGACAGAAGGTTTTGCCATTTATGATGCAATGATGCAGTTGAAAAATGAGgtttgtttctttaaattaagaat-cacttcgaatgattatttagttgcatgccttgttgactactattgatgatggttcttggtagta----acaagatgagaca
|| || |||||||| || |||||||| || |||||||||||||||||||| |||||||||||    || | ||   | |   | || || |    |||  |   ||   |   ||||||  |  || |  | |    |  || ||  |    ||    | | || 
GTTGGGATGGAGACTGAGGGTTTTGCTATCTATGATGCAATGATGCAGTTAAAAAATGAGgt--aattttctagtctgattttgcaatttgtccaatttatc--ttaactattttgttgggtgttacttttaagtccttctgataacaggttactttgtaaaac-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5760326|gb|AI965753.1|AI965753
EST:     AGACAGAAGGTTTTGCCATTTATGATGCAATGATGCAGTTGAAAAATGAG                         ATACACACAGTGGCGGTTGGATCTGCTATAGGTCAAGCCTGTTTGCTACTT
genomic: AGACAGAAGGTTTTGCCATTTATGATGCAATGATGCAGTTGAAAAATGAGgtttgtttct ... tcctgagcagATACACACAGTGGCGGTTGGATCTGCTATAGGTCAAGCCTGTTTGCTACTT
EST: gi|254314926|gb|GR829919.1|GR829919
EST:     AGACAGAAGGTTTTGCCATTTATGATGCAATGATGCAGTTGAAAAATGAG                         ATACACACAGTGGCGGTTGGATCTGCTATAGGTCAAGCCTGTTTGCTACTT
genomic: AGACAGAAGGTTTTGCCATTTATGATGCAATGATGCAGTTGAAAAATGAGgtttgtttct ... tcctgagcagATACACACAGTGGCGGTTGGATCTGCTATAGGTCAAGCCTGTTTGCTACTT