1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GTTTGTACAGAGGTGAGACCTGCCACAGACGAAGAACTTCCATCTCCATATATCGAAGAATTTCGgtaattttctgaatgttctgtgattgaaatattttatgactgataatctgatgttcctttaccaaagtgagtttcacaatctattcacgggcagaacata...
species | Glycine max |
transcript | GLYMA19G42150.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AGACCTGCCACAGACGAAGAACTTCCATCTCCATATATCGAAGAATTTCG ATGCAATCTGGATGCTGAAATACTTAAATATGTTGAAGAAACTTATCCAGAEST: gi|19934424|gb|BQ079454.1|BQ079454
genomic: AGACCTGCCACAGACGAAGAACTTCCATCTCCATATATCGAAGAATTTCGgtaattttct ... tttcctgcagATGCAATCTGGATGCTGAAATACTTAAATATGTTGAAGAAACTTATCCAAA
EST: AGACCTGCCACAGACGAAGAACTTCCATCTCCATATATCGAAGAATTTCG ATGCAATCTGGATGCTGAAATACTTAAATATGTTGAAGAAACTTATCCAAAEST: gi|27425324|gb|CA936844.1|CA936844
genomic: AGACCTGCCACAGACGAAGAACTTCCATCTCCATATATCGAAGAATTTCGgtaattttct ... tttcctgcagATGCAATCTGGATGCTGAAATACTTAAATATGTTGAAGAAACTTATCCAAA
EST: AGACCTGCCACAGACGAAGAACTTCCATCTCCATATATCGAAGAATTTCG ATGCAATCTGGATGCTGAAATACTTAAATATGTTGAAGAAACTTATCTTAAEST: gi|9819909|gb|BE555352.1|BE555352
genomic: AGACCTGCCACAGACGAAGAACTTCCATCTCCATATATCGAAGAATTTCGgtaattttct ... tttcctgcagATGCAATCTGGATGCTGAAATACTTAAATATGTTGAAGAAACTTATCCAAA
EST: ATATATCGAAGAATTTCG ATGCAATCTGGATGCTGAAATACTTAAATATGTTGAAGAAACTTATCCAAAEST: gi|6502294|gb|AW203667.1|AW203667
genomic: ATATATCGAAGAATTTCGgtaattttct ... tttcctgcagATGCAATCTGGATGCTGAAATACTTAAATATGTTGAAGAAACTTATCCAAA
EST: AGACCTGCCACAGACGAAGAACTTCCATCTCCATATATCGAAGAATTTCG ATGCAATCTGGATGCTGAAATACTTAAATATGTTGAAGAAACTTATCCAAAEST: gi|27424501|gb|CA936021.1|CA936021
genomic: AGACCTGCCACAGACGAAGAACTTCCATCTCCATATATCGAAGAATTTCGgtaattttct ... tttcctgcagATGCAATCTGGATGCTGAAATACTTAAATATGTTGAAGAAACTTATCCAAA
EST: AGACCTGCCACAGACGAAGAACTTCCATCTCCATATATCGAAGAATTTCG ATGCAATCTGGATGCTGAAATACTTAAATATGTTGAAGAAACTTATCCAAAEST: gi|10232617|gb|BE801505.1|BE801505
genomic: AGACCTGCCACAGACGAAGAACTTCCATCTCCATATATCGAAGAATTTCGgtaattttct ... tttcctgcagATGCAATCTGGATGCTGAAATACTTAAATATGTTGAAGAAACTTATCCAAA
EST: AGACCTGCCACAGACGAAGAACTTCCATCTCCATATATCGAAGAATTTCG ATGCAATCTGGATGCTGAAATACTTAAATATGTTGAAGAAACTTATCCAAAEST: gi|7234639|gb|AW569975.1|AW569975
genomic: AGACCTGCCACAGACGAAGAACTTCCATCTCCATATATCGAAGAATTTCGgtaattttct ... tttcctgcagATGCAATCTGGATGCTGAAATACTTAAATATGTTGAAGAAACTTATCCAAA
EST: ACGAGAGAACTTCCATCTCCATATATCGAAGAATTTCG ATGCAATCTGGATGCTGAAATACTTAAATATGTTGAAGAAACTTATCCAAAEST: gi|192295752|gb|FG992593.1|FG992593
genomic: ACGA-AGAACTTCCATCTCCATATATCGAAGAATTTCGgtaattttct ... tttcctgcagATGCAATCTGGATGCTGAAATACTTAAATATGTTGAAGAAACTTATCCAAA
EST: AGACCTGCCACAGACGAAGAACTTCCATCTCCATATATCGAAGAATTTCG ATGCAATCTGGATGCTGAAATACTTAAATATGTTGAAGAAACTTATCCAAAEST: gi|151412172|gb|EV281984.1|EV281984
genomic: AGACCTGCCACAGACGAAGAACTTCCATCTCCATATATCGAAGAATTTCGgtaattttct ... tttcctgcagATGCAATCTGGATGCTGAAATACTTAAATATGTTGAAGAAACTTATCCAAA
EST: AGACCTGCCACAGACGAAGAACTTCCATCTCCATATATCGAAGAATTTCG ATGCAATCTGGATGCTGAAATACTTAAATATGTTGAAGAAACTTATCCAAAEST: gi|208299695|gb|GE097178.1|GE097178
genomic: AGACCTGCCACAGACGAAGAACTTCCATCTCCATATATCGAAGAATTTCGgtaattttct ... tttcctgcagATGCAATCTGGATGCTGAAATACTTAAATATGTTGAAGAAACTTATCCAAA
EST: AGACCTGCCACAGACGAAGAACTTCCATCTCCATATATCGAAGAATTTCG ATGCAATCTGGATGCTGAAATA
genomic: AGACCTGCCACAGACGAAGAACTTCCATCTCCATATATCGAAGAATTTCGgtaattttct ... tttcctgcagATGCAATCTGGATGCTGAAATA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTTGTACAGAGGTGAGACCTGCCACAGACGAAGAACTTCCATCTCCATATATCGAAGAATTTCGgtaattttctgaatgttctgtgattgaaatattttatgactgataatctgatgttcctttaccaaagtgagtttcacaatctattcacgggcagaacata
- - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA