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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAAACTTGTCCGCGATGCCTTTCAGCTGGCAAAAGAGAAGTCTCCATGCATTATATTTATGGATGAAATTGATGCAATTGGAACAAAGCGTTTCGATAGgtatgagcaagcaggaatttagatctacgtattcattatcttttcttttctttttttattgggaaagggctggttcttgtttcaataatatcagttttgcaaccttgtgatgttatttggttgctggttgcag

Basic information

species Glycine max
transcript GLYMA19G42110.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G42110.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os02g56000.1 (Oryza sativa), 5'ss of exon 6
CAAAACTTGTCCGCGATGCCTTTCAGCTGGCAAAAGAGAAGTCTCCATGCATTATATTTATGGATGAAATTGATGCAATTGGAACAAAGCGTTTCGATAGgtatgagcaagcaggaatttagatctacgtattca-ttatcttttcttttctttttttattgggaaagggctggttcttgtttcaataatatcagttttgcaaccttgtgatgttatttggttgctggttgcag
|||| |||||||| |||||||||||||| ||||| ||||| || || ||||| || ||||| ||||||||||| |||||||||||||||||||| ||||||||  |   ||||     ||  ||| | | || ||  ||    |  | || ||       |   |||  |    || ||  | | | |                                              
CAAAGCTTGTCCGTGATGCCTTTCAGCTTGCAAAGGAGAAATCCCCCTGCATCATTTTTATTGATGAAATTGACGCAATTGGAACAAAGCGTTTTGATAGgtac-atttagcattgtcttt-atcaatgcatgcaactagacatattattgttcacagtataataaactgtaattttttcctgctacag---------------------------------------------

upper sequence: GLYMA19G42110.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os04g21660.1 (Oryza sativa), 5'ss of exon 6
CAAAACTTGTCCGCGATGCCTTTCAGCTGGCAAAAGAGAAGTCTCCATGCATTATATTTATGGATGAAATTGATGCAATTGGAACAAAGCGTTTCGATAGgtatgagcaagcaggaatttagatctacgtattcattatcttttcttttctttttttattgggaaagggctggttcttgtttcaataatatcagttttgcaaccttgtgatgttatttggttgctggttgcag
||| |||||| || |||||||||||||| || ||||||||  | ||||||||||| || || ||||||||||||||||||||||  ||||  || ||||||||||| ||| || |    | | ||      ||||| || |     |||    | |       ||    || | |||| ||    |||| ||  |   ||||   | ||                        
CAAGACTTGTTCGTGATGCCTTTCAGCTTGCTAAAGAGAAAGCCCCATGCATTATTTTCATTGATGAAATTGATGCAATTGGAAGCAAGCACTTTGATAGgtatga-caaacatgg---tcgttcc-----ttcatcatttcccacttttgaatatgtgaacaaatacactaggtctt-ttctgttaatttctttccagcaattgtttgt-----------------------

upper sequence: GLYMA19G42110.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G032505_T02 (Zea mays), 5'ss of exon 6
CAAAACTTGTCCGCGATGCCTTTCAGCTGGCAAAAGAGAAGTCTCCATGCATTATATTTATGGATGAAATTGATGCAATTGGAACAAAGCGTTTCGATAGgtatgagc-aagcaggaatttagatctacgtattcattatcttttctttt--------ctttttttattgggaaagggctggttcttgtttcaataatatcag--------ttttgcaaccttgtgatgttatttggttgctggttgcag-------------------------------------------------
|||| |||||||| ||||| || ||||| || ||||||||  |||| || ||||||||||| ||||| || ||||| ||||| || || ||||| ||||||||||           | |||   |  | | ||   ||   |  | ||||         |  | ||  | |||      || |  | |  |  | |  |||||        |||||   |  | |  ||| |     |   |  |   ||                                                 
CAAAGCTTGTCCGGGATGCATTCCAGCTTGCCAAAGAGAAAGCTCCTTGTATTATATTTATTGATGAGATAGATGCCATTGGCACCAAACGTTTTGATAGgtatgttttgtatgacattttcagttcatgcatgattttattcctgttttggctgatgatactctttataggatgaaaatgttaatcgcctatacaggatcagagcactttttttgtttcaatttagtgtaaacaaatcattcttattaggaagaagcttatctgatgcatgctccataattttgttctcttggtacag

upper sequence: GLYMA19G42110.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G027282_T01 (Zea mays), 5'ss of exon 6
CAAAACTTGTCCGCGATGCCTTTCAGCTGGCAAAAGAGAAGTCTCCATGCATTATATTTATGGATGAAATTGATGCAATTGGAACAAAGCGTTTCGATAGgtatgagcaagcaggaatttagatctacgtattcattatcttttcttttctttttttattgggaaagggctggttcttgtttcaataatatcagttttgcaaccttgtgatgttatttggttgctggttgcag
| || |||||  | ||||| |||||||| || || |||||  | || ||||| || ||||| |||||||||||||| ||||||||||||||||| || |||||            | |||   ||  |   |  | | ||||| ||      |||| |     |   |  ||   |    ||  |||    || |||  ||| |                             
CTAAGCTTGTTAGAGATGCTTTTCAGCTTGCTAAGGAGAAAGCCCCGTGCATCATCTTTATTGATGAAATTGATGCCATTGGAACAAAGCGTTTTGACAGgtacattttttatttagtttg--tcatccagtctaatgtctttcctaacaccttttaacctacatcagtttgtgaccaagtttgataga--cattttaacaagc-----------------------------

upper sequence: GLYMA19G42110.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G173849_T01 (Zea mays), 5'ss of exon 2
CAAAACTTGTCCGCGATGCCTTTCAGCTGGCAAAAGAGAAGTCTCCATGCATTATATTTATGGATGAAATTGATGCAATTGGAACAAAGCGTTTCGATAGgtatgagcaagcaggaatttagatctacgtattcattatcttttcttttctttttttattgggaaagggctggttcttgtttcaata-atatcagttttgcaaccttgtgatgttatttggttgctggttgcag
|||| |||||||| ||||| || ||||| || ||||||||  |||| || ||||||||||| ||||| || ||||| || || || || ||||| ||||||||||        |  ||||  | ||           ||  ||   || ||  |||   ||   |    ||   |    |   |||    |||||||   |||                               
CAAAGCTTGTCCGGGATGCATTCCAGCTTGCCAAAGAGAAAGCTCCTTGTATTATATTTATTGATGAGATAGATGCCATCGGCACCAAACGTTTTGATAGgtatgccttttatgacatttttagct------cttgcatggttctattcctgctttggctgatgatactctttatgagatgaaaatgtgaatcagttgcacaagac----------------------------

upper sequence: GLYMA19G42110.1 (Glycine max), 5'ss of exon 4
lower sequence: AT3G05530.1 (Arabidopsis thaliana), 5'ss of exon 6
CAAAACTTGTCCGCGATGCCTTTCAGCTGGCAAAAGAGAAGTCTCCATGCATTATATTTATGGATGAAATTGATGCAATTGGAACAAAGCGTTTCGATAGgtatgagcaagcaggaatttagatctacgtattcat-tatcttttcttttctttttttattgggaaagggctggttcttgtttcaataatatcagttttgcaaccttgtgatgttatttggttgctggttgcag
|||| |||||||| ||||||||||| || || ||||||||  |||| |||||||| || || |||||||| ||||| ||||| |||||||||||||| |||||    |||       | |   || |   |||||| ||| | | |  ||  |    |||| |   |   |   |||||   |  | | || |||                                       
CAAAGCTTGTCCGTGATGCCTTTCAACTTGCCAAAGAGAAAGCTCCGTGCATTATCTTCATAGATGAAATCGATGCCATTGGTACAAAGCGTTTCGACAGgta----caaatctttttctgattcca---attcatgtatttctgcactttctcagctatttgctcaaatcacattctttggttgagagta-cag---------------------------------------

upper sequence: GLYMA19G42110.1 (Glycine max), 5'ss of exon 4
lower sequence: AT1G09100.1 (Arabidopsis thaliana), 5'ss of exon 6
CAAAACTTGTCCGCGATGCCTTTCAGCTGGCAAAAGAGAAGTCTCCATGCATTATATTTATGGATGAAATTGATGCAATTGGAACAAAGCGTTTCGATAGgtatgagcaagcaggaatttagatctacgtattcattatcttttcttttctttttttattgggaaagggctggttcttgtttcaataatatcagttttgcaaccttgtgatgttatttggttgctggttgcag
||||||||||||| ||||| || | ||| ||||||||||| || || || |||||||| || ||||| ||||| ||||| || ||||||||||| ||||||||             || ||||   | ||  | | ||| || | || | | |  | | |     |  ||||  | ||  ||   | | |                                           
CAAAACTTGTCCGTGATGCTTTCCTGCTTGCAAAAGAGAAATCCCCTTGTATTATATTCATAGATGAGATTGACGCAATAGGGACAAAGCGTTTTGATAGgtactct---------atctagagtcatgtcataactattttattttctttctgatgact-----aatgctgacttttaattggcttacag------------------------------------------

upper sequence: GLYMA19G42110.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv14s0060g02260.t01 (Vitis vinifera), 5'ss of exon 6
CAAAACTTGTCCGCGATGCCTTTCAGCTGGCAAAAGAGAAGTCTCCATGCATTATATTTATGGATGAAATTGATGCAATTGGAACAAAGCGTTTCGATAGgtatgagcaagcaggaatttagatctacgtatt-cattatcttttcttttctttttttattgggaaagggctggttcttgtttcaataatatcagttttgcaaccttgtgatgttatttggttgctggttgcag
| ||||||||||| |||||||||||||| || |||||||| ||||| ||||| || ||||| |||||||||||||| || || |||||||| || ||||||||  | | |  |    |||||  |||| | || ||| || |||  || ||    |  ||| |||  |   |  |    ||      |  | |||  |      ||   ||  ||  |  |    |  ||||||
CGAAACTTGTCCGTGATGCCTTTCAGCTTGCTAAAGAGAAATCTCCTTGCATCATTTTTATAGATGAAATTGATGCCATAGGCACAAAGCGGTTTGATAGgta--aaccattattggtttagcactacatctttcatgatattt--ttatcaaaatggatttggattgaaattatcaaggtgaactcatgagcagcctccttgactatagacttt--tctgccttttattgcag

upper sequence: GLYMA19G42110.1 (Glycine max), 5'ss of exon 4
lower sequence: EFJ37626 (Selaginella moellendorffii), 5'ss of exon 6
CAAAACTTGTCCGCGATGCCTTTCAGCTGGCAAAAGAGAAGTCTCCATGCATTATATTTATGGATGAAATTGATGCAATTGGAACAAAGCGTTTCGATAGgtatgagcaagcaggaatttagatctacgtattcattatcttttcttttctttttttattgggaaagggctggttcttgtttcaataatatcagttttgcaaccttgtgatgttatttggttgctggttgcag
|||| || ||  | ||||||||||||||||||||||||||| | || ||||| || || || |||||| | || || ||||| || || ||||| ||||||| ||  |    |        |  |    || | |   |   ||   | |                                                                                   
CAAAGCTCGTAAGAGATGCCTTTCAGCTGGCAAAAGAGAAGGCGCCCTGCATCATTTTCATCGATGAAGTCGACGCTATTGGGACCAAACGTTTTGATAGgtttggtctcaaaacggacacggccggtttactaacagtgacttacatacag---------------------------------------------------------------------------------

upper sequence: GLYMA19G42110.1 (Glycine max), 5'ss of exon 4
lower sequence: EFJ15061 (Selaginella moellendorffii), 5'ss of exon 6
CAAAACTTGTCCGCGATGCCTTTCAGCTGGCAAAAGAGAAGTCTCCATGCATTATATTTATGGATGAAATTGATGCAATTGGAACAAAGCGTTTCGATAGgtatgagcaagcaggaatttagatctacgtattcattatcttttcttttctttttttattgggaaagggctggttcttgtttcaataatatcagttttgcaaccttgtgatgttatttggttgctggttgcag
|||| || ||  | ||||||||||||||||||||||||||| | || ||||| || || || |||||| | || || ||||| || || ||||| ||||||| ||  |       ||   | | |  |   || | || |  |   || | |                                                                                 
CAAAGCTCGTAAGAGATGCCTTTCAGCTGGCAAAAGAGAAGGCGCCCTGCATCATTTTCATCGATGAAGTCGACGCTATTGGGACCAAACGTTTTGATAGgtttggtc---tcaaaacggacaccggccggtttactaacagtgacttacatacag-----------------------------------------------------------------------------