Sequence
atgc intronic sequence ATGC exonic sequenceTTCTGGAACTTCTGAAAACACCAAGGTGGTAATTGATCATGGTGCTGTCCCAATTTTTGTAAAGCTCCTTGGTTCACCCAATGATGATGTCCGTGAACAGgtacatttcgtgtaccttatcatatatttgtttatcaataaaaattatacacattcttaaaatgagaacagattactttttatgttgtttaaccagaaaa...
Basic information
species | Glycine max |
transcript | GLYMA19G41770.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA19G41770.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os01g14950.1 (Oryza sativa), 5'ss of exon 4
TTCTGGAACTTCTGAAAACACCAAGGTGGTAATTGATCATGGTGCTGTCCCAATTTTTGTAAAGCTCCTTGGTTCACCCAATGATGATGTCCGTGAACAGgta------catttcgtg-taccttatcatatatttgtttatcaataaaaattatacacattcttaaaatga--gaacagattactttttatgttgtttaaccagaaaa-----
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ATCTGGCACTTCGGAGAATACAAAGGTTGTCATTGATCATGGGGCTGTACCAATATTTGTGAAGCTTCTTGGTTCTTCTAGTGATGATGTTCGTGAGCAGgtatccgatcatctcctgacttgtctttgtgctttctgtacttccttgatattattttgattgagtgcattgttggagttattaatgtttttacctcttgaaaaaaaattgaag
upper sequence: GLYMA19G41770.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv14s0060g01510.t01 (Vitis vinifera), 5'ss of exon 4
TTCTGGAACTTCTGAAAACACCAAGGTGGTAATTGATCATGGTGCTGTCCCAATTTTTGTAAAGCTCCTTGGTTCACCCAATGATGATGTCCGTGAACAGgtacatttcgtgtaccttatcatatatttgtt--tatcaataaaaattatacacattcttaaaatgagaacagattactttttatgttgtttaaccagaaaa-
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TTCTGGGACATCTGACAACACTAAGGTGGTAATTGATCATGGGGCTGTCCCGGTGTTTGTGAAACTTCTTGGTTCTCCAAGTGATGATGTTCGTGAACAGgtacatattttgaagaacattcc-tacctgctaatatagtttttagtttagtttgtctttttaattattgc--atttttttttggtatgcttgtttggaatgtMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|254325496|gb|GR838377.1|GR838377EST: CAATTTTTGTAAAGCTCCTTGGTTCACCCAATGATGATGTCCGTGAACAG GCTGTTTGGGCATTAGGAAATGTTGCCGGAGATTCACCCAGATGCCGTGAT
genomic: CAATTTTTGTAAAGCTCCTTGGTTCACCCAATGATGATGTCCGTGAACAGgtacatttcg ... ggacaatcagGCTGTTTGGGCATTAGGAAATGTTGCCGGAGATTCACCCAGATGCCGTGAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTCTGGAACTTCTGAAAACACCAAGGTGGTAATTGATCATGGTGCTGTCCCAATTTTTGTAAAGCTCCTTGGTTCACCCAATGATGATGTCCGTGAACAGgtacatttcgtgtaccttatcatatatttgtttatcaataaaaattatacacattcttaaaatgagaacagattactttttatgttgtttaaccagaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aataaaaa