Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTACACCTGCTATATCTCACCCAAAGTCATTGAAATTGCCAAAGAATTTTGATGCAAGGACAGCTTGGTCTCAGTGTAGCACTATTGGAAGAATTCTAGgtcctacttactcattctctgtttattttttctaattagatagtgcatttggatggaggggctgactcttgtttttattgttgacaatgacatggattgctaaaccaatttcctcgttaaag

Basic information

species Glycine max
transcript GLYMA19G41120.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22524028|gb|BU082839.1|BU082839
EST:     TGATGCAAGGACAGCTTGGTCTCAGTGTAGCACTATTGGAAGAATTCTAG                         ATCAG
genomic: TGATGCAAGGACAGCTTGGTCTCAGTGTAGCACTATTGGAAGAATTCTAGgtcctactta ... ctcgttaaagATCAG
EST: gi|7796797|gb|AW782191.1|AW782191
EST:     TGATGCAAGGACAGCTTGGTCTCAGTGTAGCACTATTGGAAGAATTCTAG                         ATCAG
genomic: TGATGCAAGGACAGCTTGGTCTCAGTGTAGCACTATTGGAAGAATTCTAGgtcctactta ... ctcgttaaagATCAG
EST: gi|254322390|gb|GR837804.1|GR837804
EST:     TGATGCAAGGACAGCTTGGTCTCAGTGTAGCACTATTGGAAGAATTCTAG                         ATCAG
genomic: TGATGCAAGGACAGCTTGGTCTCAGTGTAGCACTATTGGAAGAATTCTAGgtcctactta ... ctcgttaaagATCAG
EST: gi|298196328|gb|HO044719.1|HO044719
EST:     TGATGCAAGGACAGCTTGGTCTCAGTGTAGCACTATTGGAAGAATTCTAG                         ATCAG
genomic: TGATGCAAGGACAGCTTGGTCTCAGTGTAGCACTATTGGAAGAATTCTAGgtcctactta ... ctcgttaaagATCAG
EST: gi|208239211|gb|GE037205.1|GE037205
EST:     TGATGCAAGGACAGCGTGGTCTCAGTGTAGCACTATTGGAAGAATTCTAG                         ATCAG
genomic: TGATGCAAGGACAGCTTGGTCTCAGTGTAGCACTATTGGAAGAATTCTAGgtcctactta ... ctcgttaaagATCAG
EST: gi|7925061|gb|AW831087.1|AW831087
EST:     TGATGCAAGGACAGCTTGGTCTCAGTGTAGCACTATTGGAAGAATTCTAG                         ATCAG
genomic: TGATGCAAGGACAGCTTGGTCTCAGTGTAGCACTATTGGAAGAATTCTAGgtcctactta ... ctcgttaaagATCAG
EST: gi|7591427|gb|AW707160.1|AW707160
EST:     TGATGCAAGGACAGCTTGGTCTCAGTGTAGCACTATTGGAAGAATTCTAG                         ATCAG
genomic: TGATGCAAGGACAGCTTGGTCTCAGTGTAGCACTATTGGAAGAATTCTAGgtcctactta ... ctcgttaaagATCAG
EST: gi|192330291|gb|FK020576.1|FK020576
EST:     TGATGCAAGGACAGCTTGGTCTCAGTGTAGCACTATTGGAAGAATTCTAG                         ATCAG
genomic: TGATGCAAGGACAGCTTGGTCTCAGTGTAGCACTATTGGAAGAATTCTAGgtcctactta ... ctcgttaaagATCAG
EST: gi|13480326|gb|BG509669.1|BG509669
EST:     TGATGCAAGGACAGCTTGGTCTCAGTGTAGCACTATTGGAAGAATTCTAG                         ATCAG
genomic: TGATGCAAGGACAGCTTGGTCTCAGTGTAGCACTATTGGAAGAATTCTAGgtcctactta ... ctcgttaaagATCAG
EST: gi|192314667|gb|FK005949.1|FK005949
EST:     TGATGCAAGGACAGCTTGGTCTCAGTGTAGCACTATTGGAAGAATTCTAG                         ATCAG
genomic: TGATGCAAGGACAGCTTGGTCTCAGTGTAGCACTATTGGAAGAATTCTAGgtcctactta ... ctcgttaaagATCAG
EST: gi|120493127|gb|EH221294.1|EH221294
EST:     TGATGCAAGGACAGCTTGGTCTCAGTGTAGCACTATTGGAAGAATTCTAG                         ATCAG
genomic: TGATGCAAGGACAGCTTGGTCTCAGTGTAGCACTATTGGAAGAATTCTAGgtcctactta ... ctcgttaaagATCAG
EST: gi|6454707|gb|AW185390.1|AW185390
EST:     TGATGCAAGGACAGCTTGGTCTCAGTGTAGCACTATTGGAAGAATTCTAG                         ATCAG
genomic: TGATGCAAGGACAGCTTGGTCTCAGTGTAGCACTATTGGAAGAATTCTAGgtcctactta ... ctcgttaaagATCAG
EST: gi|151407971|gb|EV277786.1|EV277786
EST:     TGATGCAAGGACAGCTTGGTCTCAGTGTAGCACTATTGGAAGAATTCTAG                         ATCAG
genomic: TGATGCAAGGACAGCTTGGTCTCAGTGTAGCACTATTGGAAGAATTCTAGgtcctactta ... ctcgttaaagATCAG
EST: gi|9986531|gb|BE660639.1|BE660639
EST:     TGATGCAAGGACAGCTTGGTCTCAGTGTAGCACTATTGGAAGAATTCTAG                         ATCAG
genomic: TGATGCAAGGACAGCTTGGTCTCAGTGTAGCACTATTGGAAGAATTCTAGgtcctactta ... ctcgttaaagATCAG
EST: gi|9986532|gb|BE660640.1|BE660640
EST:     TGATGCAAGGACAGCTTGGTCTCAGTGTAGCACTATTGGAAGAATTCTAG                         ATCAG
genomic: TGATGCAAGGACAGCTTGGTCTCAGTGTAGCACTATTGGAAGAATTCTAGgtcctactta ... ctcgttaaagATCAG
EST: gi|23064266|gb|BU579039.1|BU579039
EST:     GCACTATTGGAAGAATTCTAG                         ATCAG
genomic: GCACTATTGGAAGAATTCTAGgtcctactta ... ctcgttaaagATCAG
EST: gi|254320264|gb|GR831072.1|GR831072
EST:     CACTATTGGAAGAATTCTAG                         ATCAG
genomic: CACTATTGGAAGAATTCTAGgtcctactta ... ctcgttaaagATCAG
EST: gi|19452880|gb|BM954290.1|BM954290
EST:     TGATGCAAGGACAGCTTGGTCTCAGTGTAGCACTATTGGAAGAATTCTAG                         ATCAG
genomic: TGATGCAAGGACAGCTTGGTCTCAGTGTAGCACTATTGGAAGAATTCTAGgtcctactta ... ctcgttaaagATCAG
EST: gi|24136646|gb|BU927156.1|BU927156
EST:     TGATGCAAGGACAGCTTGGTCTCAGTGTAGCACTATTGGAAGAATTCTAG                         ATCAG
genomic: TGATGCAAGGACAGCTTGGTCTCAGTGTAGCACTATTGGAAGAATTCTAGgtcctactta ... ctcgttaaagATCAG
EST: gi|19934893|gb|BQ079914.1|BQ079914
EST:     TGATGCAAGGACAGCTTGGTCTCAGTGTAGCACTATTGGAAGAATTCTAG                         ATCAG
genomic: TGATGCAAGGACAGCTTGGTCTCAGTGTAGCACTATTGGAAGAATTCTAGgtcctactta ... ctcgttaaagATCAG
EST: gi|22524928|gb|BU083739.1|BU083739
EST:     TGATGCAAGGACAGCTTGGTCTCAGTGTAGCACTATTGGAAGAATTCTAG                         ATCAG
genomic: TGATGCAAGGACAGCTTGGTCTCAGTGTAGCACTATTGGAAGAATTCTAGgtcctactta ... ctcgttaaagATCAG
EST: gi|192314666|gb|FK005948.1|FK005948
EST:     TGATGCAAGGACAGCTTGGTCTCAGTGTAGCACTATTGGAAGAATTCTAG                         ATCAG
genomic: TGATGCAAGGACAGCTTGGTCTCAGTGTAGCACTATTGGAAGAATTCTAGgtcctactta ... ctcgttaaagATCAG
EST: gi|6482896|gb|AW202106.1|AW202106
EST:     GATGCAAGGACAGCTTGGTCTCAGTGTAGCACTATTGGGAAGAATTCTAG                         ATCAG
genomic: GATGCAAGGACAGCTTGGTCTCAGTGTAGCACTATTGG-AAGAATTCTAGgtcctactta ... ctcgttaaagATCAG
EST: gi|19452860|gb|BM954270.1|BM954270
EST:     TGATGCAAGGACAGCTTGGTCTCAGTGTAGCACTATTGGAAGAATTCTAG                         ATCAG
genomic: TGATGCAAGGACAGCTTGGTCTCAGTGTAGCACTATTGGAAGAATTCTAGgtcctactta ... ctcgttaaagATCAG
EST: gi|7692565|gb|AW760668.1|AW760668
EST:     TGATGCAAGGACAGCTTGGTCTCAGTGTAGCACTATTGGAAGAATTCTAG                         ATCAG
genomic: TGATGCAAGGACAGCTTGGTCTCAGTGTAGCACTATTGGAAGAATTCTAGgtcctactta ... ctcgttaaagATCAG
EST: gi|298174540|gb|HO017763.1|HO017763
EST:     TGATGCAAGGACAGCTTGGTCTCAGTGTAGCACTATTGGAAGAATTCTAG                         ATCAG
genomic: TGATGCAAGGACAGCTTGGTCTCAGTGTAGCACTATTGGAAGAATTCTAGgtcctactta ... ctcgttaaagATCAG
EST: gi|23733671|gb|BU765041.1|BU765041
EST:     TGATGCAAGGACAGCTTGGTCTCAGTGTAGCACTATTGGAAGAATTCTAG                         ATCAG
genomic: TGATGCAAGGACAGCTTGGTCTCAGTGTAGCACTATTGGAAGAATTCTAGgtcctactta ... ctcgttaaagATCAG
EST: gi|21889139|gb|BQ742352.1|BQ742352
EST:     TGATGCAAGGACAGCTTGGTCTCAGTGTAGCACTATTGGAAGAATTCTAG                         ATCAG
genomic: TGATGCAAGGACAGCTTGGTCTCAGTGTAGCACTATTGGAAGAATTCTAGgtcctactta ... ctcgttaaagATCAG
EST: gi|11688232|gb|BF595908.1|BF595908
EST:     TGATGCAAGGACAGCTTGGTCTCAGTGTAGCACTATTGGAAGAATTCTAG                         ATCAG
genomic: TGATGCAAGGACAGCTTGGTCTCAGTGTAGCACTATTGGAAGAATTCTAGgtcctactta ... ctcgttaaagATCAG
EST: gi|24205547|gb|BU964800.1|BU964800
EST:     TGATGCAAGGACAGCTTGGTCTCAGTGTAGCACTATTGGAAGAATTCTAG                         ATCAG
genomic: TGATGCAAGGACAGCTTGGTCTCAGTGTAGCACTATTGGAAGAATTCTAGgtcctactta ... ctcgttaaagATCAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGTACACCTGCTATATCTCACCCAAAGTCATTGAAATTGCCAAAGAATTTTGATGCAAGGACAGCTTGGTCTCAGTGTAGCACTATTGGAAGAATTCTAGgtcctacttactcattctctgtttattttttctaattagatagtgcatttggatggaggggctgactcttgtttttattgttgacaatgacatggattgctaaaccaatttcctcgttaaag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAAGA