Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACGGAGATAGATTTTGGAGGATGCCTGAATGCTATATACGAGGCAATACAATCAAGTACCTTCGAGTTCCTGATGAGgtgtgtattgtgtgtgcagtgctaatgacattttatttttttatttgttaatttaaaaacttgtaaatgggttgagaagaagggaaccttgccacggtag...

Basic information

species Glycine max
transcript GLYMA19G39780.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G39780.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os01g15310.1 (Oryza sativa), 5'ss of exon 4
GACGGAGATAGATTTTGGAGGATGCCTGAATGCTATATACGAGGCAATACAATCAAGTACCTTCGAGTTCCTGATGAGgtgtgtattgt----gtgtgcagtgctaatgacattttatttttttatttgttaatttaaaaacttg-taaatgggttgagaagaagggaaccttgccacggtag
|| || ||||  |||||||||||||| ||||| || || || || || || |||||||| ||||| |||||||||||||| || ||| |     |||  |    |  | ||  | |  || |   |||| |  ||  |    | |  |  |  |||    |   |   |    |||       
GATGGTGATAAGTTTTGGAGGATGCCAGAATGTTACATCCGTGGGAACACCATCAAGTATCTTCGGGTTCCTGATGAGgtatggatttttaacatgttaaaccttgtttactatgtgcttgtg-gtttgctggttgtatgtttagacatgtatgttctccatctgcataatcagccttt----

upper sequence: GLYMA19G39780.1 (Glycine max), 5'ss of exon 4
lower sequence: AT5G27720.1 (Arabidopsis thaliana), 5'ss of exon 5
GACGGAGATAGATTTTGGAGGATGCCTGAATGCTATATACGAGGCAATACAATCAAGTACCTTCGAGTTCCTGATGAGgtg--tgtattgtgtgtgca-gtgctaatgacattttatttttttatttgttaatttaaaaacttgtaaatgggttgagaagaagggaaccttgccacggtag
|||||||||||||||||||||||||| ||||| ||||| || || || ||||||||||||||||||||||| ||||||||   | | || ||||||   |||   ||  |  ||  ||  | || || ||  |||     | | |   |||  |||  |      | ||    || | || 
GACGGAGATAGATTTTGGAGGATGCCGGAATGTTATATCCGTGGTAACACAATCAAGTACCTTCGAGTTCCGGATGAGgtaatttttttttgtgtgtgtgtgtatatatctcttgcttgatctagttttttctttgttcccctctctctggaatgatgatgctt-agccaaatca-gata-

upper sequence: GLYMA19G39780.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv07s0005g00230.t01 (Vitis vinifera), 5'ss of exon 6
GACGGAGATAGATTTTGGAGGATGCCTGAATGCTATATACGAGGCAATACAATCAAGTACCTTCGAGTTCCTGATGAGgtgtgtattgtgtgtgcagtgctaatgacattttatttttttatttgttaatttaaaaacttgtaaatgggttgagaagaagggaaccttgccacggtag---
|| |||||||| |||||||| |||||||| ||||| || || || |||||||| || || |||||||||||||||||||| ||| |    | | |    |   |   |  | | | | | |  |   | |  |    ||||| |  |   |  |   |   |    |||   |  |     
GATGGAGATAGGTTTTGGAGAATGCCTGAGTGCTACATCCGTGGGAATACAATTAAATATCTTCGAGTTCCTGATGAGgtatgtctgaaatcttcctcacatgtttaagctaaatctatgaccttacagtgcatt--cttgtta-cgttctttgcttagttgtcttttggtcctattttgt

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15286667|gb|BI470558.1|BI470558
EST:     AATGCTATATACGAGGCAATACAATCAAGTACCTTCGAGTTCCTGATGAG                         GTTATTGACAAAGTTCAAGAAGAAACCAAGAGCCGTGCAG
genomic: AATGCTATATACGAGGCAATACAATCAAGTACCTTCGAGTTCCTGATGAGgtgtgtattg ... attattttagGTTATTGACAAAGTTCAAGAAGAAACCAAGAGCCGTGCAG
EST: gi|9259879|gb|BE348026.1|BE348026
EST:     AATGCTATATACGAGGCAATACAATCAAGTACCTTCGAGTTCCTGATGAG                         GTTATTGACAAAGTTCAAGAAGAAACCAAGAGCCGTGCAG
genomic: AATGCTATATACGAGGCAATACAATCAAGTACCTTCGAGTTCCTGATGAGgtgtgtattg ... attattttagGTTATTGACAAAGTTCAAGAAGAAACCAAGAGCCGTGCAG