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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTACAATGGAAACATTAATACAATTGATGGGTGTGCAACATTTTTCCGTAGAGACAGATTTTCTCATGTGAAAAAATATGAGgttagaaattgttttatgtgtatgacagttctcttaagttagtacaaaacatagtgatgtctgtttgcatgcag

Basic information

species Glycine max
transcript GLYMA19G39210.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G39210.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os10g27230.1 (Oryza sativa), 5'ss of exon 5
GTTTACAATGGAAACATTAATACAATTGATGGGTGTGCAACATTTTTCCGTAGAGACAGATTTTCTCATGTGAAAAAATATGAGgttagaa----attgttttatgtgtatgacagttctct-taagttagtacaaaacatagtgatgtctgtttg--catgcag
|| || | ||||     | || | || ||||| ||||| || |||||||||||||||| |||||| || || ||||||||||||||  |        || |||  | ||   |   |  |||  | | |    | |   |   |    | |   ||    | |||
GTATATACTGGAGCTCCTCATGCCATCGATGGCTGTGCCACCTTTTTCCGTAGAGACAAATTTTCACACGTTAAAAAATATGAGgtacggccactgctgatttgagagtggtatgctaatctgcaggctgcagctatctaatatttcttgtacctggttgttcag

upper sequence: GLYMA19G39210.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv08s0007g07020.t01 (Vitis vinifera), 5'ss of exon 4
GTTTACAATGGAAACATTAATACAATTGATGGGTGTGCAACATTTTTCCGTAGAGACAGATTTTCTCATGTGAAAAAATATGAGgttagaaattgttt-tat-gtgtatgacagttctcttaagttagtacaa--aacatagt-gatgtctgtttgcatgcag
||||||| ||| || ||  ||||||||||||| |||||||||||||| || || || |||||||| ||||| |||||||||||||| |  || ||||| |||  || |   ||||| |||   |||| | ||      | | | ||| | || ||| || |||
GTTTACACTGGTAATATCCATACAATTGATGGTTGTGCAACATTTTTTCGCAGGGATAGATTTTCACATGTCAAAAAATATGAGgtaatgaagtgtttgtattatggactccagttttctgtggttattgcacttgctaaaatagatttatgcttgtatacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6501991|gb|AW203364.1|AW203364
EST:     GTGCAACATTTTTCCGTAGAGACAGATTTTCTCATGTGAAAAAATATGAG                         GTTGAATTTAATAAGGCTGCACAGTCTTTAACAGATGCTGTGATTCCGACC
genomic: GTGCAACATTTTTCCGTAGAGACAGATTTTCTCATGTGAAAAAATATGAGgttagaaatt ... ttgcatgcagGTTGAATTTAATAAGGCTGCACAGTCTTTAACAGATGCTGTGATTCCGACC
EST: gi|208248499|gb|GE048140.1|GE048140
EST:     GTGCAACATTTTTCCGTAGAGACAGATTTTCTCATGTGAAAAAATATGAG                         GTTGAATTTAATAAGGCTGCACAGTCTTTAACAGATGCTGTGATTCCGACC
genomic: GTGCAACATTTTTCCGTAGAGACAGATTTTCTCATGTGAAAAAATATGAGgttagaaatt ... ttgcatgcagGTTGAATTTAATAAGGCTGCACAGTCTTTAACAGATGCTGTGATTCCGACC