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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTTACTTCGCCAGAAGAACAGGAAGCTTATATACGTAGCTGGCTTGAGGAAAGGATTGGTTTCAAGGCAGACTTCAAAATTTCTTTTTATCCCGGGAAGgtaactttttggtaaagttagctatttcctttatgtttcatatcactactgtcggttcttacattttgaaattctcatgtgtag

Basic information

species Glycine max
transcript GLYMA19G38720.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G38720.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os11g05990.1 (Oryza sativa), 5'ss of exon 4
TTTTACTTCGCCAGAAGAACAGGAAGCTTATATACGTAGCTGGCTTGAGGAAAGGATTGGTTTCAAGGCAGACTTCAAAATTTCTTTTTATCCCGGGAAGgtaa----ctttttggtaaagttagctatttcctttatgtttcatatcactactgtcggttcttacattttgaaattctcatgtgtag
 |||| ||| ||| ||||||| |||||||||||  | || ||||| || |||||| ||||||||||| ||||||||||||| || || ||||| || |||||||      | ||   | |   ||  | |  | ||        | |    | |    || || | ||       ||   | || |||
ATTTAGTTCTCCACAAGAACAAGAAGCTTATATGAGGAGTTGGCTGGAAGAAAGGGTTGGTTTCAAGACAGACTTCAAAATATCATTCTATCCTGGAAAGgtaagggttctcttttcataacaagtgaataaccttgcaacat-tgtgttcattacttgt-ctaatatcaattgtttgcaaagtatag

upper sequence: GLYMA19G38720.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G175453_T02 (Zea mays), 5'ss of exon 5
TTTTACTTCGCCAGAAGAACAGGAAGCTTATATACGTAGCTGGCTTGAGGAAAGGATTGGTTTCAAGGCAGACTTCAAAATTTCTTTTTATCCCGGGAAGgtaactttttggtaaagttagctatttcctttatgtttcatatcactactgtcggttcttacattttgaaattctcatgtgtag
||||| ||| |||||||| || |||   |||||  | |  ||||| || |||||  ||||||||||| ||||||||||||| || |||||||| || ||||||||| ||   |    ||    |      ||       || |   ||      ||  |  || |||     |  ||  |  ||
TTTTAGTTCACCAGAAGAGCAAGAAAAATATATGAGGAATTGGCTGGAAGAAAGAGTTGGTTTCAAGACAGACTTCAAAATATCATTTTATCCTGGAAAGgtaactcttcctttt--ttcagcacaatgcttgaacactatgtgcatagctcacgtagtcgcaattt-----ttccaactacag

upper sequence: GLYMA19G38720.1 (Glycine max), 5'ss of exon 4
lower sequence: AT3G11670.1 (Arabidopsis thaliana), 5'ss of exon 4
TTTTACTTCGCCAGAAGAACAGGAAGCTTATATACGTAGCTGGCTTGAGGAAAGGATTGGTTTCAAGGCAGACTTCAAAATTTCTTTTTATCCCGGGAAGgtaactttttggtaaagttagctatttcctttatgtttcatatcactactgtcggttcttacattttgaaattctcatgtgtag-----------------------
 || |  || || |||||||| ||   |||||||||||  ||| | ||||||||||||||||||||||| || || ||||| || ||||| || || ||||||   | ||| | |  || | |  |   ||| | |||| |||  || |       | || || ||   | ||||   | |||                        
CTTCAGCTCACCTGAAGAACAAGAGAGTTATATACGTAAATGGTTGGAGGAAAGGATTGGTTTCAAGGCTGATTTTAAAATCTCCTTTTACCCAGGAAAGgta---tgttgatcattttggattctatttttttatttc-tatggctgccaatatgtttttcaatt---atttctatagagtaactgagctttctggtttcttatag

upper sequence: GLYMA19G38720.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv08s0105g00260.t01 (Vitis vinifera), 5'ss of exon 4
TTTTACTTCGCCAGAAGAACAGGAAGCTTATATACGTAGCTGGCTTGAGGAAAGGATTGGTTTCAAGGCAGACTTCAAAATTTCTTTTTATCCCGGGAAGgtaactttttggtaaagttagctatttcctttatgtttcatatcactactgtcggttctt-acat-tttgaaattctcatgtgtag-
||||| ||| |||||||| ||||| | ||| || |||| |||||||||||||||| ||||||| ||||| || ||||| || || |||||||| || ||||||  | |||| | || |    | ||  || | |  || ||  || ||  |||  |   | |||| ||||   || |  | | |   
TTTTAGTTCACCAGAAGAGCAGGAGGTTTACATTCGTAACTGGCTTGAGGAAAGGGTTGGTTTTAAGGCTGATTTCAAGATCTCCTTTTATCCAGGAAAGgtagttatttgatgaactggattcttcactctcttgttaat--cattatagtcaataaatgacatatttgttcttgttgtttcttag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207762733|gb|GD732964.1|GD732964
EST:     AAAGGATTGGTTTCAAGGCAGACTTCAAAATTTCTTTTTATCCCGGGAAG                         TTTTCGAAAGCAAGACGGAGTATAATACCTGCT
genomic: AAAGGATTGGTTTCAAGGCAGACTTCAAAATTTCTTTTTATCCCGGGAAGgtaacttttt ... tcatgtgtagTTTTCGAAAGCAAGACGGAGTATAATACCTGCT
EST: gi|298180947|gb|HO022386.1|HO022386
EST:     AAAGGATTGGTTTCAAGGCAGACTTCAAAATTTCTTTTTATCCCGGGAAG                         TTTTCGAAAGCAAGACGGAGTATAATACCTGCTGGAGATACTTCTCAATTT
genomic: AAAGGATTGGTTTCAAGGCAGACTTCAAAATTTCTTTTTATCCCGGGAAGgtaacttttt ... tcatgtgtagTTTTCGAAAGCAAGACGGAGTATAATACCTGCTGGAGATACTTCTCAATTT