Sequence
atgc intronic sequence ATGC exonic sequenceAAAAGCCGTACCTGTTGTATCGGAATGCTGCTCAAGAAGTTAACGGAATATGGTTTTACAATCCAGATGAATGTGAAGAAGTTGCAAATCTCTTTAACAGgtatggtaatttattaattttctccactcaagttattcatagtgtttttctttgcttgtttatgctgaaacttttagttacaacttacaagatgctaatt...
Basic information
species | Glycine max |
transcript | GLYMA19G38280.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA19G38280.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os07g14580.1 (Oryza sativa), 5'ss of exon 4
AAAAGCCGTACCTGTTGTATCGGAATGCTGCTCAAGAAGTTAACGGAATATGGTTTTACAATCCAGATGAATGTGAAGAAGTTGCAAATCTCTTTAACAGgtatggtaatttattaattttctccactcaagttattcatagtgttttt----ctttgcttgtttatgc-tgaaacttttagttacaacttacaagatg-ctaatt
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AGGTTCCCTATATAATGTATCGCAATGCTGCACAAGAAGTTATTGGCATTTGGTTTTATAATTCCCAGGAATGCGAAGAAGTTGCAAATCTTTTTAGCAGgta----aattcgt--atttcctacaaataatgctcctttagtccttttagactttagtgtctttgtggaccgtgctcctagtttcttgttgtagattgtctggtt
upper sequence: GLYMA19G38280.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G144618_T01 (Zea mays), 5'ss of exon 4
AAAAGCCGTACCTGTTGTATCGGAATGCTGCTCAAGAAGTTAACGGAATATGGTTTTACAATCCAGATGAATGTGAAGAAGTTGCAAATCTCTTTAACAGgtatgg---taatttattaattttctccactcaagttattcatagtgtttttctttgcttgtt-tatgctgaaacttttagttacaacttacaagatgctaatt
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AAGCTCCTTATATTATGTACCGAAATGCTGCTCAAGAAGTTATAGGAATTTGGTTTTACAACTCTCAGGAGTGTCAAGAAGTTGCAAATCTTTTTAGCAGgtatcagtttaaaattgtaattattactcctgcttttgtctttagggctcttctc--cttgtcatggattacaataagtaaaggcaactt-catcaagttttt-
upper sequence: GLYMA19G38280.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G011173_T02 (Zea mays), 5'ss of exon 4
AAAAGCCGTACCTGTTGTATCGGAATGCTGCTCAAGAAGTTAACGGAATATGGTTTTACAATCCAGATGAATGTGAAGAAGTTGCAAATCTCTTTAACAGgtatggtaatttattaattttctccactcaagttattcatagtgtttttctttgcttgtttatgctgaaacttttagttacaactta-caagatgctaatt--
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AACCTCCATATTTGTTGTACCGGAATGCTTCACAAGAAGTAAATGGAATTTGGTTTTACAATCAACATGACTGTGAAGCTGTTGCAAGTCTATTTGGAAGgtaaaggcttttcatg-tattctcctctcctcatgtcggaggaatctttctctga--aattctgatgtagatcataaacattattgaacaatatgctaataga
upper sequence: GLYMA19G38280.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G101596_T01 (Zea mays), 5'ss of exon 4
AAAAGCCGTACCTGTTGTATCGGAATGCTGCTCAAGAAGTTAACGGAATATGGTTTTACAATCCAGATGAATGTGAAGAAGTTGCAAATCTCTTTAACAGgtatg----gtaatttattaattttctccactcaagttattcatagtgtttttctt-tgcttgtttatgctgaaacttttagttacaacttacaagatgctaatt
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AAGCTCCTTATATAATGTACCGCAATGCTGCTCAAGAAGTTATAGGAATCTGGTTTTACAATTCCCAGGAGTGTCAACAGGTTGCAAATCTTTTCAGCAGgtatcagttgcaaacttgtaattattactcctgcttgtgtctttagggctcttgtcatgaatgttta-atcaagttattaagtt----ttttcattcttctgata
upper sequence: GLYMA19G38280.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv08s0007g02870.t01 (Vitis vinifera), 5'ss of exon 4
AAAAGCCGTACCTGTTGTATCGGAATGCTGCTCAAGAAGTTAACGGAATATGGTTTTACAATCCAGATGAATGTGAAGAAGTTGCAAATCTCTTTAACAGgtatggtaatttattaattttctccactcaagttattcatagtgtttttctttgcttgtttatgctgaaacttttagttacaactta--caagatgctaatt
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AGGTTCCATATTTACTGTACCGAAATGCTGCCCAGGAAGTCAATGGTATTTGGTTTTACAATTCACGTGAATGTGAGGAAGTTGCAAATCTCTTTAGTAGgtattatttctttcacatctctctcatttatgtcaataatgaattacatgtttctatgttagattttatctatgtggtgcttgcttaatttatatatgga--Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|18734971|gb|BM528492.1|BM528492EST: TGGTTTTACAATCCAGATGAATGTGAAGAAGTTGCAAATCTCTTTAACAG GATACTTAATGCATACC
genomic: TGGTTTTACAATCCAGATGAATGTGAAGAAGTTGCAAATCTCTTTAACAGgtatggtaat ... caatttacagGATACTTAATGCATACC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AAAAGCCGTACCTGTTGTATCGGAATGCTGCTCAAGAAGTTAACGGAATATGGTTTTACAATCCAGATGAATGTGAAGAAGTTGCAAATCTCTTTAACAGgtatggtaatttattaattttctccactcaagttattcatagtgtttttctttgcttgtttatgctgaaacttttagttacaacttacaagatgctaatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT