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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGGGCAATAAACTTAATGGCAGATGTTGCTCAAATGGAAAACTTGAACAAGATGAATGCACGTAATATTGCAATGGTTTTTGCACCAAACATGACTCAAgtaagactaaatcattttttgttgtaaatgtagtatacggttctgctcttagccccaatttttgttattgagttcataccagtcaaactcatcttattgg...

Basic information

species Glycine max
transcript GLYMA19G38120.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G38120.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os11g05540.1 (Oryza sativa), 5'ss of exon 4
TTGGGCAATAAACTTAATGGCAGATGTTGCTCAAATGGAAAACTTGAACAAGATGAATGCACGTAATATTGCAATGGTTTTTGCACCAAACATGACTCAAgtaagactaaatcattttttgttgtaaatgtagtatacggttctgctcttagccccaatttttgttattgagttcatac-cagtcaaactcatcttattgg
 |||||| | || |||||||| |||||||  |||   ||| |  | |||||||||||||| ||||| ||||| ||||||||||||||||| |||||||| ||||  |    ||     |  |  ||||  ||      | || |     | | |   ||  ||  | |   |  ||||   | |  |              
GTGGGCAGTTAATTTAATGGCTGATGTTGTCCAAGAAGAACAGATAAACAAGATGAATGCTCGTAACATTGCTATGGTTTTTGCACCAAATATGACTCAGgtaatgcactgtc----ctaataataaactta-----tgattttaagtgtggtc--gatgcttactgtcatgcacatatgtaatgcag-------------

upper sequence: GLYMA19G38120.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os12g05900.1 (Oryza sativa), 5'ss of exon 4
TTGGGCAATAAACTTAATGGCAGATGTTGCTCAAATGGAAAACTTGAACAAGATGAATGCACGTAATATTGCAATGGTTTTTGCACCAAACATGACTCAAgtaagactaaatcattttttg-ttgtaaatgtagtatacggttctgctcttagccccaatttttgttattgagttcataccagtcaaactcatcttattgg
 |||||  | || || ||||| |||||||  |||   ||  |  | |||||||||||||| || |||||||| ||||||||||||||||| |||||||| |||       ||| | ||  | |  |     |  |||    ||  |   |     | || | |||| |   |  | || |                     
CTGGGCTGTTAATTTGATGGCTGATGTTGTCCAAGAAGAGCAAATAAACAAGATGAATGCGCGCAATATTGCCATGGTTTTTGCACCAAATATGACTCAGgtagtgtgttatcctattgcgatcatggtactgatatttcattagg---tggattctaactgttgtcacacatgtaatgcag-------------------

upper sequence: GLYMA19G38120.1 (Glycine max), 5'ss of exon 4
lower sequence: AT3G11490.1 (Arabidopsis thaliana), 5'ss of exon 4
TTGGGCAATAAACTTAATGGCAGATGTTGCTCAAATGGAAAACTTGAACAAGATGAATGCACGTAATATTGCAATGGTTTTTGCACCAAACATGACTCAAgtaagactaaatcattttttgttgtaaatgtagtatacggttctgctcttagccccaatttttgttattgagttcataccagtcaaactcatcttattgg
|||||| || ||  ||||||| ||||||| | | |||||| |  | |||||||||||||| || || |||||||||||||||||||| ||||||||||| |||||         |||||||   | ||| |     | | || |    |  |  |  ||||| || | |||  |||  | | |   |             
TTGGGCTATCAATCTAATGGCTGATGTTGTTGAGATGGAACAACTTAACAAGATGAATGCTCGAAACATTGCAATGGTTTTTGCACCTAACATGACTCAGgtaag---------ttttttga-atgaatct--ctaaagattgtttgatgtgttcgtattttggtaaatgacatcagtcaaattgcag------------

upper sequence: GLYMA19G38120.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv08s0007g03140.t01 (Vitis vinifera), 5'ss of exon 4
TTGGGCAATAAACTTAATGGCAGATGTTGCTCAAATGGAAAACTTGAACAAGATGAATGCACGTAATATTGCAATGGTTTTTGCACCAAACATGACTCAAgtaagactaaatcatttt-ttgttgtaaatgta-gtatacggttc------tgctcttagccccaatttttgttattgagttcataccagtcaaactcatcttattgg
|||||||||||| |||||||| |||||||||||||||||| | |||||||||||||||||||| ||| | || ||||| ||||||||||||||||||||||| ||  | | | ||||| |||    ||    | |  ||    ||      |||| ||||    |       ||  ||  | |  ||  ||  |    || |      
TTGGGCAATAAATTTAATGGCTGATGTTGCTCAAATGGAACATTTGAACAAGATGAATGCACGCAATGTGGCTATGGTGTTTGCACCAAACATGACTCAAgtgag--tgagttattttcttggccaaaccacacgcttataactcctttgttgcttttagtgatatccaagtttcctgtttcctgacaggtggagagtatat------

upper sequence: GLYMA19G38120.1 (Glycine max), 5'ss of exon 4
lower sequence: PP1S13_243V6.1 (Physcomitrella patens), 5'ss of exon 4
TTGGGCAATAAACTTAATGGCAGATGTTGCTCAAATGGAAAACTTGAACAAGATGAATGCACGTAATATTGCAATGGTTTTTGCACCAAACATGACTCAAgtaagactaaatcattttttgttgtaaatg-tagtatacggttctgctcttagccccaatttttgttattgagttcataccag----tcaaactcatcttattgg------------------------
 |||||  | || || ||||| ||||| |  |||   |||    | ||||||||||| || || |||||||||||||| ||||| || || |||||||| ||||| |    ||    |      |  ||| | | |   |  |    | |  |      ||||   | || |  ||||    |      ||    | | ||                            
CTGGGCTGTCAATTTGATGGCTGATGTAGTCCAAGACGAAGTAGTCAACAAGATGAACGCTCGCAATATTGCAATGGTCTTTGCTCCTAATATGACTCAGgtaagtcatcttcgacctcccccttggatgctggcacttgaataccatttacgatttttttttcactcttcacctcattttggaacgctaactgaagcctaacacctgtttcgacctctatatctgcag

upper sequence: GLYMA19G38120.1 (Glycine max), 5'ss of exon 4
lower sequence: PP1S107_15V6.1 (Physcomitrella patens), 5'ss of exon 5
TTGGGCAATAAACTTAATGGCAGATGTTGCTCAAATGGAAAACTTGAACAAGATGAATGCACGTAATATTGCAATGGTTTTTGCACCAAACATGACTCAAgta-agactaaatcat--------tttttgttgtaaatgtagtatacggttctgctcttagccccaatttttgttattgagttcataccagtcaaactcatcttattgg------------------------------------------------------------------------------------
 ||||| || ||| | ||||| ||||| |   |  ||||    |  |||||||||||||| || || ||||| ||||||||||| || |||||||| || ||| |||  |  || |        | ||| || | ||  |||| ||  | |       |    |   || |      ||  |||  |  |      | |||  | |  |                                                                                    
CTGGGCCATCAACCTCATGGCGGATGTGGTGGAGCTGGAGTCTTACAACAAGATGAATGCTCGCAACATTGCTATGGTTTTTGCTCCGAACATGACACAGgtatagagcacctcttcggtggtctctttcttttgaaactagtttagagctaaaactgtgtagcgtgttgtctcccgtgttttctcatgatctttgcacattatttcagcctcgaaggtcgtttgttgttagttggtgttcgatctgttgacgaaggtcatctctttgataatttgagtttcttgccctgcag

upper sequence: GLYMA19G38120.1 (Glycine max), 5'ss of exon 4
lower sequence: PP1S159_36V6.1 (Physcomitrella patens), 5'ss of exon 5
TTGGGCAATAAACTTAATGGCAGATGTTGCTCAAATGGAAAACTTGAACAAGATGAATGCACGTAATATTGCAATGGTTTTTGCACCAAACATGACTCAAgtaagactaaatcatt----ttttgttgtaaatgtagtatacggttctgctcttagccccaatttttgttattgagttc-ataccagtcaaactcatcttattgg------------------------------------------------------------------------------------
 |||||  | ||| | ||||| |||||||   |    ||     | ||||| ||||||||||| |||||||||||||| |||||||| |||||||| || ||| |   |  ||  |    || ||          |   |  |   ||  ||||| ||  | || | |  |||  || |  ||     || |||| ||  | | |                                                                                    
CTGGGCTGTCAACCTGATGGCCGATGTTGTCGAGCACGAGGTTCTCAACAAAATGAATGCACGAAATATTGCAATGGTGTTTGCACCTAACATGACGCAGgtatg-tgatgtcgctgcaattgtgcgcctccccaaacttgtgacacttttctta-ccagacttgtagagattcggtcctgtagttagcagactc-tccgactagatttctacgtgatctaaggaagtatttgtgttaagcttgttatatgaagtgaataacatattaactatgattcattacttgcag