1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
ATTTCTCATCATTCCTCACACCCTCCCCTTAATGAGAGGATTATTTCATCCATGACCAGGAGATCTGTTGCTGCACACCCATGGCATGACCTTGAGATAGgtaagcattcagaaataggtgaaaaatggtgacttgttagtgcttcaattacatcgaattgtgtttcttcgtttcttttccttaattggtttgccaaggtaactatgttttcttccgcaatgcag
species | Glycine max |
transcript | GLYMA19G35710.3 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CATGACCAGGAGATCTGTTGCTGCACACCCATGGCATGACCTTGAGATAG GACCTGGTGCTCCAATTATCTTCAATTGTEST: gi|9901982|gb|BE610950.1|BE610950
genomic: CATGACCAGGAGATCTGTTGCTGCACACCCATGGCATGACCTTGAGATAGgtaagcattc ... cgcaatgcagGACCTGGTGCTCCAATTATCTTCAATTGT
EST: CATGACCAGGAGATCTGTTGCTGCACACCCATGGCATGACCTTGAGATAG GACCTGGTGCTCCAATTATCTTCAATTGTEST: gi|193534902|gb|FK489066.1|FK489066
genomic: CATGACCAGGAGATCTGTTGCTGCACACCCATGGCATGACCTTGAGATAGgtaagcattc ... cgcaatgcagGACCTGGTGCTCCAATTATCTTCAATTGT
EST: CATGACCAGGAGATCTGTTGTTGCACACCCATGGCATGACCTTGAGATAG GACCTGGTGCTCCAATTATCTTCAATTGTEST: gi|193665609|gb|FK609230.1|FK609230
genomic: CATGACCAGGAGATCTGTTGCTGCACACCCATGGCATGACCTTGAGATAGgtaagcattc ... cgcaatgcagGACCTGGTGCTCCAATTATCTTCAATTGT
EST: CATGACCAGGAGATCTGTTGCTGCACACCCATGGCATGACCTTGAGATAG GACCTGGTGCTCCAATTATCTTCAATTGTEST: gi|22523592|gb|BU082403.1|BU082403
genomic: CATGACCAGGAGATCTGTTGCTGCACACCCATGGCATGACCTTGAGATAGgtaagcattc ... cgcaatgcagGACCTGGTGCTCCAATTATCTTCAATTGT
EST: CATGACCAGGAGATCTGTTGCTGCACACCCATGGCATGACCTTGAGATAG GACCTGGTGCTCCAATTATCTTCAATTGTEST: gi|193635563|gb|FK582088.1|FK582088
genomic: CATGACCAGGAGATCTGTTGCTGCACACCCATGGCATGACCTTGAGATAGgtaagcattc ... cgcaatgcagGACCTGGTGCTCCAATTATCTTCAATTGT
EST: CATGACCAGGAGATCTGTTGCTGCACACCCATGGCATGACCTTGAGATAG GACCTGGTGCTCCAATTATCTTCAATTGTEST: gi|22540225|gb|BU090068.1|BU090068
genomic: CATGACCAGGAGATCTGTTGCTGCACACCCATGGCATGACCTTGAGATAGgtaagcattc ... cgcaatgcagGACCTGGTGCTCCAATTATCTTCAATTGT
EST: CATGACCAGGAGATCTGTTGCTGCACACCCATGGCATGACCTTGAGATAG GACCTGGTGCTCCA-TTAATCTTTAATTGTEST: gi|193314904|gb|FK281404.1|FK281404
genomic: CATGACCAGGAGATCTGTTGCTGCACACCCATGGCATGACCTTGAGATAGgtaagcattc ... cgcaatgcagGACCTGGTGCTCCAATTA-TCTTCAATTGT
EST: CATGACCAGGAAATCTGTTGCTGCACACCCATGGCATGACCTTGAGATAG GACCTGGTGCTCCAATTATCTTCAATTGTEST: gi|193576426|gb|FK530793.1|FK530793
genomic: CATGACCAGGAGATCTGTTGCTGCACACCCATGGCATGACCTTGAGATAGgtaagcattc ... cgcaatgcagGACCTGGTGCTCCAATTATCTTCAATTGT
EST: CATGACCAGGAGATCTGTTGCTGCACACCCATGGCATGACCTTGAGATAG GACCTGGTGCTCCAATTATCTTCTAATTTGTEST: gi|208305097|gb|GE102798.1|GE102798
genomic: CATGACCAGGAGATCTGTTGCTGCACACCCATGGCATGACCTTGAGATAGgtaagcattc ... cgcaatgcagGACCTGGTGCTCCAATTATCTTC-AATT-GT
EST: CATGACCAGGAGATCTGTTGCTGCACACCCATGGCATGACCTTGAGATAG GACCTGGTGCTCCAATTATCTTCAATTGEST: gi|298189455|gb|HO037858.1|HO037858
genomic: CATGACCAGGAGATCTGTTGCTGCACACCCATGGCATGACCTTGAGATAGgtaagcattc ... cgcaatgcagGACCTGGTGCTCCAATTATCTTCAATTG
EST: CATGACCAGGAGATCTGTTGCTGCACACCCATGGCATGACCTTGAGATAG GACCTGGTGCTCCAATTATCTTCAATTGTEST: gi|208126482|gb|GD924788.1|GD924788
genomic: CATGACCAGGAGATCTGTTGCTGCACACCCATGGCATGACCTTGAGATAGgtaagcattc ... cgcaatgcagGACCTGGTGCTCCAATTATCTTCAATTGT
EST: CATGACCAGGAGATCTGTTGCTGCACACCCATGGCATGACCTTGAGATAG GACCTGGTGCTCCAATTATCTTCAATTGTGTGATTGEST: gi|8669991|gb|BE191098.1|BE191098
genomic: CATGACCAGGAGATCTGTTGCTGCACACCCATGGCATGACCTTGAGATAGgtaagcattc ... cgcaatgcagGACCTGGTGCTCCAATTATCTTCAATTGTGTGATTG
EST: CATGACCAGGAGATCTGTTGCTGCACACCCATGGCATGACCTTGAGATAG GACCTGGTGCTCCAATTATCTTCAATTGTEST: gi|17964359|gb|BM271095.1|BM271095
genomic: CATGACCAGGAGATCTGTTGCTGCACACCCATGGCATGACCTTGAGATAGgtaagcattc ... cgcaatgcagGACCTGGTGCTCCAATTATCTTCAATTGT
EST: CATGACCAGGAGATCTGTTGCTGCACACCCATGGCATGACCTTGAGATAG GACCTGGTGCTCCAATTATCTTCAATTGTEST: gi|298182727|gb|HO031462.1|HO031462
genomic: CATGACCAGGAGATCTGTTGCTGCACACCCATGGCATGACCTTGAGATAGgtaagcattc ... cgcaatgcagGACCTGGTGCTCCAATTATCTTCAATTGT
EST: CATGACCAGGAGATCTGTTGCTGCACACCCATGGCATGACCTTGAGATAG GACCTGGTGCTCCAATTATCTTCAATTGTEST: gi|207833133|gb|GD801810.1|GD801810
genomic: CATGACCAGGAGATCTGTTGCTGCACACCCATGGCATGACCTTGAGATAGgtaagcattc ... cgcaatgcagGACCTGGTGCTCCAATTATCTTCAATTGT
EST: CACACCCATGGCATGACCTTGAGATAG GACCTGGTGCTCCAATTTATTCTTTCAATTGT
genomic: CACACCCATGGCATGACCTTGAGATAGgtaagcattc ... cgcaatgcagGACCTGGTGCTCCAA-TTA-TC-TTCAATTGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTTCTCATCATTCCTCACACCCTCCCCTTAATGAGAGGATTATTTCATCCATGACCAGGAGATCTGTTGCTGCACACCCATGGCATGACCTTGAGATAGgtaagcattcagaaataggtgaaaaatggtgacttgttagtgcttcaattacatcgaattgtgtttcttcgtttcttttccttaattggtttgccaaggtaactatgttttcttccgcaatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC