Sequence
atgc intronic sequence ATGC exonic sequenceTGGTGACCACACAGTAAAGATAATTGATTGTGAAACTGGAAGTTGCTTAAAGGTGTTAGTTGGTCATAGGAGAACGCCTTGGGTGgtaagtttgaaccttttttgaatgaagtttgatgagatgtgctatgaagtttgaactctgaagaagtagcaattttatgaaattgagttattaaaattat...
Basic information
species | Glycine max |
transcript | GLYMA19G35370.3 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA19G35370.3 (Glycine max), 5'ss of exon 4
lower sequence: AT5G43930.4 (Arabidopsis thaliana), 5'ss of exon 4
TGGTGACCACACAGTAAAGATAATTGATTGTGAAACTGGAAGTTGCTTAAAGGTGTTAGTTGGTCATAGGAGAACGCCTTGGGTGgtaagtt--tgaaccttttttgaatgaagtt--tgatgagatgtgctatgaagtttgaactctgaagaagtagcaattttatgaaattgagttattaaaattat
|||||| || || || ||||| ||||||||||||||||||| |||||||| || || ||| |||||||| || |||||||| ||||||| |||| | | || | | | |||| | ||| | | | | |||| |||| | | ||| || ||
TGGTGATCATACTGTGAAGATTATTGATTGTGAAACTGGAAACTGCTTAAAAGTTTTGACTGGCCATAGGAGGACTCCTTGGGTAGTAAgttagtgaatgctagccccctttccttaacgttaatatgtatcct----tttctgcgtttgatatgtagtgcatttacaacac---attactacgtatag
upper sequence: GLYMA19G35370.3 (Glycine max), 5'ss of exon 4
lower sequence: AT5G43930.2 (Arabidopsis thaliana), 5'ss of exon 4
TGGTGACCACACAGTAAAGATAATTGATTGTGAAACTGGAAGTTGCTTAAAGGTGTTAGTTGGTCATAGGAGAACGCCTTGGGTGgtaagtt--tgaaccttttttgaatgaagtt--tgatgagatgtgctatgaagtttgaactctgaagaagtagcaattttatgaaattgagttat-taaaattat
|||||| || || || ||||| ||||||||||||||||||| |||||||| || || ||| |||||||| || |||||||| ||||||| |||| | | || | | | |||| | ||| | | | | |||| |||| | | || || | ||
TGGTGATCATACTGTGAAGATTATTGATTGTGAAACTGGAAACTGCTTAAAAGTTTTGACTGGCCATAGGAGGACTCCTTGGGTAgtaagttagtgaatgctagccccctttccttaacgttaatatgtatcct----tttctgcgtttgatatgtagtgcatttacaacacattactacgtatagata-
upper sequence: GLYMA19G35370.3 (Glycine max), 5'ss of exon 4
lower sequence: Vv07s0005g04630.t01 (Vitis vinifera), 5'ss of exon 4
TGGTGACCACACAGTAAAGATAATTGATTGTGAAACTGGAAGTTGCTTAAAGGTGTTAGTTGGTCATAGGAGAACGCCTTGGGTGgtaagtttgaaccttttttgaatgaagtttgatgagatgtgctatgaagtttgaactctgaagaagt----agcaatt-ttatgaaattgagttattaaaattat
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TGGTGACCACACTGTAAAGATAATTGATTGCCATACTGGAAGCTGCTTAAAGGTGTTAACTGGTCATCGAAGGACACCTTGGGTGgtaagtctgagttaagaacatatgca--tcaagcagtctttatttgctccttattcttacatgaaatctataataactattgtagcagcaacacat-aaaatc--Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|193597700|gb|FK552774.1|FK552774EST: CTGGAAGTTGCTTAAAGGTGTTAGTTGGTCATAGGAGAACGCCTTGGGTG GTTAGGTTCCATCCATTGCACCCACATATACTTGCTAGTGGGAGCTTGGAT
genomic: CTGGAAGTTGCTTAAAGGTGTTAGTTGGTCATAGGAGAACGCCTTGGGTGgtaagtttga ... aacggtacagGTTAGGTTCCATCCATTGCACCCACATATACTTGCTAGTGGGAGCTTGGAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGGTGACCACACAGTAAAGATAATTGATTGTGAAACTGGAAGTTGCTTAAAGGTGTTAGTTGGTCATAGGAGAACGCCTTGGGTGgtaagtttgaaccttttttgaatgaagtttgatgagatgtgctatgaagtttgaactctgaagaagtagcaattttatgaaattgagttattaaaattat
- - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA