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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGAGCGTGCTGTTCAAGGGGTTACATATTCAGTGGACATGTGGTTGCATTATTGCATATTTGCTATAAGCACATATGGGGATCCAAACACTGTTCGTAGgtaatggaagtttagttgtttgtcatccttttatttatttatttttttgcattggtagattttgatttgattttccattcactaggctcagctgtttcttgcctgctatctaacccaatttcag

Basic information

species Glycine max
transcript GLYMA19G35140.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G35140.1 (Glycine max), 5'ss of exon 4
lower sequence: AT1G04080.3 (Arabidopsis thaliana), 5'ss of exon 4
ATGAGCGTGCTGTTCAAGGGGTTACATATTCAGTGGACATGTGGTTGCATTATTGCATATTTGCTATAAGCACATATGGGGATCCAAACACTGTTCGTAGgtaatggaagtttagttgtttgtcatccttttatttatttatttttttgcattggtagattttgatttgattttccattcactaggctcagctgtttcttgcctgctatctaacccaatttcag--
||||  | || || |  || || |||||||||||||| || ||||||||||||||||  ||||| || |  |||||||| |||||| | ||  |  | |||||||| | | |||           | ||| ||||| | | | | ||  ||       | || |   |||||||||| | ||   |   |  || ||      | | |||||||||  |||     
ATGAAAGAGCAGTGCTGGGAGTGACATATTCAGTGGATATCTGGTTGCATTATTGCACTTTTGCCATCAATACATATGGAGATCCAGAAACGATCAGAAGgtaatgaatgctta-----------ttcttctatttgtatgtgtattaaca-------acttgg---tgattttccaattacctagacaaaatggttt-----taccatctaaccctttttttaga

upper sequence: GLYMA19G35140.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv07s0005g04280.t01 (Vitis vinifera), 5'ss of exon 4
ATGAGCGTGCTGTTCAAGGGGTTACATATTCAGTGGACATGTGGTTGCATTATTGCATATTTGCTATAAGCACATATGGGGATCCAAACACTGTTCGTAGgtaatggaagtttagttgtttgtcatccttttatttatttatttttttgcattggtagattttgatttgattttccattcactaggctcagctgtttcttgcctgctatctaacccaatttcag
|||| || || |||||||| || || ||||| ||||| || |||||||| |||||||||||||| |||||||||||||| |||||| | ||  |  | ||||||| |   ||   ||||   | ||| || || ||||  ||       |||   |     ||||  |  | |     |||| ||  || | |  |  ||   ||                   
ATGAACGGGCAGTTCAAGGTGTGACTTATTCTGTGGATATTTGGTTGCACTATTGCATATTTGCCATAAGCACATATGGAGATCCAGATACAATCAGAAGgtaatagcttttcttttgtccattatcattgtagttatacataggagatcatgattg---cttgagct--tctcgttgtcacgagaatctggtaatctttaattg-------------------