Sequence
atgc intronic sequence ATGC exonic sequenceTCCTCAACAAATTCTGCACCTGCCAAGCCACGGATGCGCTGGACACCTGAGCTTCATGAGGCATTTGTGGAGGCTGTCAACCAACTTGGTGGGAGTGAAAgtatgtctatctttctctcttttcaatgcaaggccttagtttcttaaacttctgcctccttatttttccccattatctttttacag
Basic information
species | Glycine max |
transcript | GLYMA19G35080.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA19G35080.1 (Glycine max), 5'ss of exon 4
lower sequence: AT4G28610.1 (Arabidopsis thaliana), 5'ss of exon 3
TCCTCAACAAATTCTGCACCTGCCAAGCCACGGATGCGCTGGACACCTGAGCTTCATGAGGCATTTGTGGAGGCTGTCAACCAACTTGGTGGGAGTGAAAgtatgtctatctttctctcttttcaatgcaaggccttagtttcttaaacttctgcctccttatttttccccattatctttttacag
|| | ||| | | | | |||| |||| ||||| ||||| || |||||||| ||||| ||||| |||||||||||| ||||| || ||||||||| | || | | ||||||| | | || ||| | | || | | | | |||| | ||| || | |||
TCAAACAGCAATAACGGAACGGGCAAGGCACGAATGCGTTGGACGCCAGAGCTTCACGAGGCTTTTGTTGAGGCTGTCAACAGTCTTGGCGGTAGTGAAAgtgag--catttatttctctttgctttccataaactttgaattgtatatggaaagataataactttttctttatattttact-cag
upper sequence: GLYMA19G35080.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv07s0005g04120.t01 (Vitis vinifera), 5'ss of exon 3
TCCTCAACAAATTCTGCACCTGCCAAGCCACGGATGCGCTGGACACCTGAGCTTCATGAGGCATTTGTGGAGGCTGTCAACCAACTTGGTGGGAGTGAAAgtatgt--ctatctttctctcttttcaatgcaaggccttagtttcttaa---acttctgcctccttatttttccccattatcttttta-cag
|| ||| ||| |||| || |||||||||||||||| |||||||| || ||||||||||| ||||||||||| ||||||||||||||||| ||||||||| ||| | || | || || | || ||||| || || | || | | || ||| || | || | | |||
TCGTCAGTAAACACTGCTCCAACCAAGCCACGGATGCGTTGGACACCAGAACTTCATGAGGCTTTTGTGGAGGCAGTCAACCAACTTGGTGGTAGTGAAAgtgtgtacccctcctagccttactttactgtttaaccttatttggacaatacaattataaggtcctagctttaattgttttattataaacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|7145709|gb|AW507631.1|AW507631EST: GCTTCATGAGGCATTTGTGGAGGCTGTCAACCAACTTGGTGGGAGTGAAA GAGCTACCCCTAAAGGTGTGCTGAAGCTCATGAAAGTTGATGGATTAACTA
genomic: GCTTCATGAGGCATTTGTGGAGGCTGTCAACCAACTTGGTGGGAGTGAAAgtatgtctat ... ctttttacagGAGCTACCCCTAAAGGTGTGCTGAAGCTCATGAAAGTTGATGGATTAACTA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TCCTCAACAAATTCTGCACCTGCCAAGCCACGGATGCGCTGGACACCTGAGCTTCATGAGGCATTTGTGGAGGCTGTCAACCAACTTGGTGGGAGTGAAAgtatgtctatctttctctcttttcaatgcaaggccttagtttcttaaacttctgcctccttatttttccccattatctttttacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG