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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCAGAACTGGATGGTTGTGAAAGGTGAAACAATAGTGTTTCCTGGTGGAGGAACCCACTTCCATTATGGTGCTGGTAAATACATTGCTTCAATTGCTAATgtaagcctcagtagccaatgtaatgcttcaattgttctagatctcttaaatttcggtcaaaattggtcttagtccctatattttaaaaataatgattttg...

Basic information

species Glycine max
transcript GLYMA19G34890.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G34890.1 (Glycine max), 5'ss of exon 4
lower sequence: AT3G23300.1 (Arabidopsis thaliana), 5'ss of exon 4
CCAGAACTGGATGGTTGTGAAAGGTGAAACAATAGTGTTTCCTGGTGGAGGAACCCACTTCCATTATGGTGCTGGTAAATACATTGCTTCAATTGCTAATgtaagcctcagtagcca-atgtaatgcttcaattgttctagatctcttaaatttcggtcaaaattggtcttagtccctatattttaaaaataatgattttg
||| |||||||||||||| ||||| || | |||    || ||||||||||| || || || ||||||||||||| ||| || ||||| ||||| || |||||||| |  |||  | | || | ||| |  ||| |   |   | ||   |  |||  | |    || |  || ||     | ||  |              
CCAAAACTGGATGGTTGTTAAAGGAGAGAAAATCAATTTCCCTGGTGGAGGCACACATTTTCATTATGGTGCTGATAAGTATATTGCATCAATGGCAAATgtaaggc--agttactagatcttatg-tggaatagaggtgtgtgtcc--atcttcattta---ctgatactattcatggaaattgcag-------------

upper sequence: GLYMA19G34890.1 (Glycine max), 5'ss of exon 4
lower sequence: AT1G04430.1 (Arabidopsis thaliana), 5'ss of exon 4
CCAGAACTGGATGGTTGTGAAAGGTGAAACAATAGTGTTTCCTGGTGGAGGAACCCACTTCCATTATGGTGCTGGTAAATACATTGCTTCAATTGCTAATgtaagcctcagtagccaatgtaatgcttcaattgttctagatctcttaaatttcggtcaaaattggtcttagtccctatattttaaaaataatgattttg
 |||||||||||||||| |||||| || | |||    ||||| |||||||| || || |||||||| ||||||| |||||||||||| || || || ||||||||  ||  | ||  |  |  |  ||| | || |  |  | |||  |||     |   | || |                                  
TCAGAACTGGATGGTTGAGAAAGGCGAGAAAATTTCTTTTCCCGGTGGAGGCACTCATTTCCATTACGGTGCTGATAAATACATTGCATCGATCGCAAATgtaagagtcttttgctcactttttatttctagtgata-acttgtctctaatgattttttgactttgcag-------------------------------

upper sequence: GLYMA19G34890.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv07s0005g03630.t01 (Vitis vinifera), 5'ss of exon 3
CCAGAACTGGATGGTTGTGAAAGGTGAAACAATAGTGTTTCCTGGTGGAGGAACCCACTTCCATTATGGTGCTGGTAAATACATTGCTTCAATTGCTAATgtaagcctcagtagccaatgtaatgcttcaattgttc---tagatctcttaaatttcggtcaaaattggtcttagtccctatatttt-----aaaaataatgattttg---------------------
|||||||||||||||||| ||||||||||  || |  ||||||||||| ||||| || || |||||||| ||||  || || ||||| |||||||| ||||||||  |  ||   |  |  ||||    ||  |      | ||   |  | | ||      | |||  |||| || | | | || |     | || | |||||  |                      
CCAGAACTGGATGGTTGTCAAAGGTGAAAAGATTGCATTTCCTGGTGGTGGAACTCATTTTCATTATGGAGCTGACAAGTATATTGCCTCAATTGCAAATgtaag--ttggt--tctttacaatgtccaaaagggaaaaatggaaagccaagacttgtaaatacattaatctt-gtgcttgtgttctgctgaataagtgatgatcatttttaatggattggactggcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33390342|gb|CA853537.1|CA853537
EST:     GAACCCACTTCCATTATGGTGCTGGTAAATACATTGCTTCAATTGCTAAT                         ATGCTTAATTTTCCAAACAATGATATAAACAATGGGGGAAGAGTCAGGTCT
genomic: GAACCCACTTCCATTATGGTGCTGGTAAATACATTGCTTCAATTGCTAATgtaagcctca ... gctctttcagATGCTTAATTTTCCAAACAATGATATAAACAATGGGGGAAGAGTCAGGTCT
EST: gi|33390338|gb|CA853533.1|CA853533
EST:     GAACCCACTTCCATTATGGTGCTGGTAAATACATTGCTTCAATTGCTAAT                         ATGCTTAATTTTCCAAACAATGATATAAACAATGGGGGAAGAGTCAGGTCT
genomic: GAACCCACTTCCATTATGGTGCTGGTAAATACATTGCTTCAATTGCTAATgtaagcctca ... gctctttcagATGCTTAATTTTCCAAACAATGATATAAACAATGGGGGAAGAGTCAGGTCT