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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCATGCAACCAGTTTCTGAAACAAGAGCCCGGGAGTAGCCAGGAGGCAGAGGAATTTGCCTGTACAAGGTACAAGGCTGAGTATCCCATTTTTGGAAAGgtaaggtattggttgtttgtactttgtataggcatctggatcctctactgattgtttttccgttctagatattttagggtacaaagataatagtaaactg...

Basic information

species Glycine max
transcript GLYMA19G33650.3
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G33650.3 (Glycine max), 5'ss of exon 4
lower sequence: Vv07s0104g00320.t01 (Vitis vinifera), 5'ss of exon 4
TCCATGCAACCAGTTTCTGAAACAAGAGCCCGGGAGTAGCCAGGAGGCAGAGGAATTTGCCTGTACAAGGTACAAGGCTGAGTATCCCATTTTTGGAAAGgtaag-gtattggttgtttgtac-tttgtataggcatctggatcctctactgattgtttttccg-ttctag-atattttagggtacaaagataatagtaaactg
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TCCATGCAATCAATTTCTGAAGCAAGAGCCTGGGTCGAGTGAGCAGGCACAAGAATTTGCATGTACAAGATACAAGGCTGAATATCCAATTTTTCATAAGgtaaaagaaactattatttgtatatttatagccttatgtaaaatttcaatcatatgttttggtgcttctaacacagttttaatttctattttgtcgatta----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10709776|gb|BF009500.1|BF009500
EST:     AGGAATTTGCCTGTACAAGGTACAAGGCTGAGTATCCCATTTTTGGAAAG                         GTACGTGTCAATGGACCTGATACAGCACCTGTCTACAAATTCCTTAAAGCA
genomic: AGGAATTTGCCTGTACAAGGTACAAGGCTGAGTATCCCATTTTTGGAAAGgtaaggtatt ... ttatttacagGTACGTGTCAATGGACCTGATACAGCACCTGTCTACAAATTCCTTAAAGCA
EST: gi|208048673|gb|GD846232.1|GD846232
EST:     AGGAATTTGCCTGTACAAGGTACAAGGCTGAGTATCCCATTTTTGGAAAG                         GTACGTGTCAATGGACCTGATACAGCACCTGTCTACAAATTCCTTAAAGCA
genomic: AGGAATTTGCCTGTACAAGGTACAAGGCTGAGTATCCCATTTTTGGAAAGgtaaggtatt ... ttatttacagGTACGTGTCAATGGACCTGATACAGCACCTGTCTACAAATTCCTTAAAGCA
EST: gi|208115002|gb|GD910359.1|GD910359
EST:     AGGAATTTGCCTGTACAAGGTACAAGGCTGAGTATCCCATTTTTGGAAAG                         GTACGTGTCAATGGACCTGATACAGCACCTGTCTACAAATTCCTTAAAGCA
genomic: AGGAATTTGCCTGTACAAGGTACAAGGCTGAGTATCCCATTTTTGGAAAGgtaaggtatt ... ttatttacagGTACGTGTCAATGGACCTGATACAGCACCTGTCTACAAATTCCTTAAAGCA
EST: gi|193433477|gb|FK403997.1|FK403997
EST:     GGAATTTGCCTGTACAAGGTACAAGGCTGAGTATCCCATTTTTTGGAAAG                         GTACGTGTCAATGGACCTGATACAGCACCTGTCTACAAATTCCTTAAAGCA
genomic: GGAATTTGCCTGTACAAGGTACAAGGCTGAGTATCCCA-TTTTTGGAAAGgtaaggtatt ... ttatttacagGTACGTGTCAATGGACCTGATACAGCACCTGTCTACAAATTCCTTAAAGCA
EST: gi|207711242|gb|GD693019.1|GD693019
EST:     AGGAATTTGCCTGTACAAGGTACAAGGCTGAGTATCCCATTTTTGGAAAG                         GTACGTGTCAATGGACCTGATACAGCACCTGTCTACAAATTCCTTAAA
genomic: AGGAATTTGCCTGTACAAGGTACAAGGCTGAGTATCCCATTTTTGGAAAGgtaaggtatt ... ttatttacagGTACGTGTCAATGGACCTGATACAGCACCTGTCTACAAATTCCTTAAA
EST: gi|207802831|gb|GD776144.1|GD776144
EST:     AGGAATTTGCCTGTACAAGGTACAAGGCTGAGTATCCCATTTTTGGAAAG                         GTACGTGTCAATGGACCTGATACAGCACCTGTCTACAAATTCCTTAAAGCA
genomic: AGGAATTTGCCTGTACAAGGTACAAGGCTGAGTATCCCATTTTTGGAAAGgtaaggtatt ... ttatttacagGTACGTGTCAATGGACCTGATACAGCACCTGTCTACAAATTCCTTAAAGCA